PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01012518001 | ||||||||
Common Name | LOC100260825, VIT_03s0038g00480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 26791.9 Da PI: 8.9998 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.9 | 2.5e-17 | 167 | 203 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp g+++LCnaCGl+++ kg+ GSVIVT01012518001 167 CTHCGTSSktTPMMRRGPAGPRSLCNACGLKWANKGV 203 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.162 | 28 | 63 | IPR010399 | Tify domain |
SMART | SM00979 | 4.4E-11 | 28 | 63 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.5E-12 | 34 | 62 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.245 | 95 | 137 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.4E-16 | 95 | 137 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.697 | 161 | 217 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-12 | 161 | 214 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.85E-12 | 162 | 223 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 166 | 208 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 167 | 194 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.5E-15 | 167 | 203 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.35E-15 | 167 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MNGVQDVHHN HLYVPGSDFA PVAGGGGGGG GVDQLTLSFQ GEVYVFDAVS PEKVQAVLLL 60 LGGYEVPTGI PAPGMVPPNQ RGLADFTGRS SQPQRAASLS RFREKRKERC FDKKIRYTVR 120 KEVALRMQRK KGQFTSSKAS SDEVGGGASS DWNAAHGSGQ DEPEILCTHC GTSSKTTPMM 180 RRGPAGPRSL CNACGLKWAN KGVLRDLSRV SSGVQETSLK ATQSNGDANE SGAITTVPDI 240 VSSNGDNSAV TAER* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.869 | 0.0 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ379339 | 0.0 | FQ379339.1 Vitis vinifera clone SS0AEB10YL18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270361.1 | 0.0 | PREDICTED: GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 2e-78 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | F6I1U0 | 0.0 | F6I1U0_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0038g00480.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-83 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01012518001 |
Entrez Gene | 100260825 |
Publications ? help Back to Top | |||
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