PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012447001
Common NameLOC100248959, VIT_13s0067g01630
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 560aa    MW: 60782.7 Da    PI: 4.8531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012447001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-174087148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT  Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l
  GSVIVT01012447001 40 KGPWTSSEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87
                       79******************************************9986 PP
2Myb_DNA-binding51.72e-1693136146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  GSVIVT01012447001  93 KGAFTAEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9563587IPR017930Myb domain
SMARTSM007171.3E-153989IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-3039134IPR009057Homeodomain-like
PfamPF002491.4E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-244194IPR009057Homeodomain-like
CDDcd001674.48E-124287No hitNo description
PROSITE profilePS5129426.4288142IPR017930Myb domain
SMARTSM007173.8E-1792140IPR001005SANT/Myb domain
PfamPF002491.9E-1593136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-2695141IPR009057Homeodomain-like
CDDcd001671.41E-1295136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MSHLTNESED GMLSKDQTGS PLIDEGNSSG SAGGGIVLKK GPWTSSEDAI LVEYVKKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTAEE ERLIIELHAK MGNKWARMAA  120
HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCFQALQE SQQIQNTGGI NGGDKVHHDL  180
LQTNSYEIPD VILDGFKANQ DAFPYVPDFP NLSTSSMLMK GFGSSQYCGF MAPTMHRQKR  240
VRESPALFPG YNERNGIPLF DQIQDDTGDK IAQSFGLPYP FDPDPTNKDP LPFAGMQGSH  300
ALLNGNFSAS KPISGPVKLE LPSLQYLETD LGGWGTSSSP PPLLESVDAF IQSPPSGTVQ  360
LECLSPRNSG LLDALLHEAK TISSGKNHLS DKSANSSTVT PGDLADSCLN MCETEWEDYG  420
DPISPLGHST TSIFSECTPI SASGSSLDEH PPSETFPGCN VKAEPVDQVW TPDGEKETST  480
QLDFSRPDVL LGSNWIDQST GGPKDQAMMN DAVASLFSDD FGNNYKNMAS GTPTSNQGWG  540
LGCCAWNNLP PVCQMSELP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-33381415107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.115060.0cell culture| fruit| inflorescence
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4560850.0AM456085.1 Vitis vinifera contig VV78X211164.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275846.10.0PREDICTED: transcription factor GAMYB
RefseqXP_010645528.10.0PREDICTED: transcription factor GAMYB
RefseqXP_010645530.10.0PREDICTED: transcription factor GAMYB
RefseqXP_010645531.10.0PREDICTED: transcription factor GAMYB
RefseqXP_019073249.10.0PREDICTED: transcription factor GAMYB
RefseqXP_019073250.10.0PREDICTED: transcription factor GAMYB
RefseqXP_019073251.10.0PREDICTED: transcription factor GAMYB
TrEMBLD7UD270.0D7UD27_VITVI; Uncharacterized protein
STRINGVIT_13s0067g01630.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-136myb domain protein 33