PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012249001
Common NameLOC100232936, VIT_01s0011g00110
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27745.5 Da    PI: 8.2961
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012249001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  GSVIVT01012249001  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                       79***********************************************96 PP
2K-box102.65.3e-3482172999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + ++++++++qe+ kLk+++e Lqr+qR++lGedL+ L  keL+qLe+qL+kslk+iRs+K++++l+q+++lq+ke+ l e+n+aLr+kl 
  GSVIVT01012249001  82 QPAKETQNSYQEYLKLKSKVEVLQRTQRNFLGEDLGHLGTKELEQLEHQLDKSLKQIRSTKTQFMLDQLSDLQRKEQILMEANNALRRKLG 172
                        567899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.487161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.30E-45278No hitNo description
SuperFamilySSF554551.57E-34283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-3084171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.86687177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG  60
SSMPETLERY QRCSYSALEA SQPAKETQNS YQEYLKLKSK VEVLQRTQRN FLGEDLGHLG  120
TKELEQLEHQ LDKSLKQIRS TKTQFMLDQL SDLQRKEQIL MEANNALRRK LGESSAESGL  180
GSTWEAAAHN LPYNREPVQS EDFFEPLQCD STLQIGYNPV LRVEMNGAST TQNVNGFIPG  240
WMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-31751731103Developmental protein SEPALLATA 3
4ox0_B1e-31751731103Developmental protein SEPALLATA 3
4ox0_C1e-31751731103Developmental protein SEPALLATA 3
4ox0_D1e-31751731103Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.35060.0flower| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2568590.0AY256859.1 Vitis vinifera AP1-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263410.20.0PREDICTED: MADS-box protein CMB1
SwissprotQ8LLR21e-126MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLD7T9Z71e-180D7T9Z7_VITVI; Uncharacterized protein
STRINGVIT_01s0011g00110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-104MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]