PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012247001
Common NameVIT_01s0011g00130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 499aa    MW: 55058.1 Da    PI: 8.1823
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012247001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.34.6e-43154229277
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        Cqv+gC++dls+ k+yh+rhkvC+vhsk+p+v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  GSVIVT01012247001 154 CQVHGCNMDLSSSKDYHKRHKVCDVHSKTPKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 229
                        **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-34149215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.026151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-40152233IPR004333Transcription factor, SBP-box
PfamPF031101.3E-32154227IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MESWSHALEK KITPFNFEND GLVLDRDAVE SMEFMELDSP DLVRKLLPSN PSVGFLSGEI  60
GRNSSKRIVS PTNMVTSNPI FGGEESSSRL SSSFMESNSQ DSSIIDLKLG RLADCIDAKN  120
NRCSKEGSVL SSLASSMPAK RARTTSVCSQ TPLCQVHGCN MDLSSSKDYH KRHKVCDVHS  180
KTPKVIVNGI EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG HNERRRKPQL DTHSGKPQKL  240
LQSYPGTRIL GTSLAKRPPF VFQDILPGSV YCPDGYGQAN PSRSIKLEKE PIYSSQLVIP  300
ISGQLPPKSF LHLYGTERQC PPGFLSSGTE DCTGFYPAST VQELPGVSKS NCALSLLSAQ  360
SQDLSNHLMG IPMANPPTVQ GCHAHYSAVH NSDKPIGMSS LEKFASNGSY SSRMNSVEVA  420
QMGPVMLPDG GNAVSFEVRT NRNFQGSDFL NAKYSHSSER EPTVDLLQLS SHLKRVEWQR  480
NYMHVKQEND DFHCFPTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-301532271084squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4634660.0AM463466.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X160637.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650031.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X3
TrEMBLF6HEZ90.0F6HEZ9_VITVI; Uncharacterized protein
STRINGVIT_01s0011g00130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-53SBP family protein