PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012197001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 555aa    MW: 62513.7 Da    PI: 8.8592
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048274296123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k++++  +L  H+r+H
  GSVIVT01012197001 274 HVCKLCNKRYPSGKSLGGHMRSH 296
                        79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.021274296IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.99E-6274296No hitNo description
PfamPF139122.2E-10274297IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808274296IPR007087Zinc finger, C2H2
PROSITE patternPS000280276296IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-6375402No hitNo description
SMARTSM003550.26380402IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-7380404IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515380407IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
SMARTSM003550.22436458IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-9436458IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642436458IPR007087Zinc finger, C2H2
PROSITE patternPS000280438458IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MYTKSTNRIF TLQGLPFSYP LSIKVRFCSV SNLRSQSLDR LDPWCIWHRI SLYFVTLSYL  60
VQILLIFKIC RALGFRGVQT LIRYKFLRVL VKMGLKRSFE NEEFQELPFK NMKCVESRDK  120
LASFGEIVPC KDAPQKPDIS DECSFYKFQC GTEGVENGVS VLDDKGFEIS APLSCNGSSE  180
EDGRSVAAAY SSLSPEYFES YLPRRTVAQF EDIYSSLLDC SPRRQVPVGP DHQANVPVWS  240
LQKVKNRLDK LETSNRYISS SHPSMEEEDQ KTKHVCKLCN KRYPSGKSLG GHMRSHMIGN  300
SAEAAERKKI SSLNGGRSSK KESGSQQENK PQEQQELAIC LMMLSRDSGH WGGLNSLYDL  360
SKRAKNDSYS EENVRKRSKY QCLTCNKTFH SHQALGGHRA NHKRKLARFG SGKTPIAQDL  420
SGKAEKKIGS RKSNGHMCPI CFKVFRSGQA LGGHKKSHFV GVCEDENSRT LVIKQEPLEI  480
PGLIDLNLPA PIEEEANEHV GASILCRLCL YCSFKEQGLL VSLLVPFFNS IFYVFLSLCL  540
TIEVFFSFSA CFSC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.9640.0cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4252140.0AM425214.2 Vitis vinifera contig VV78X035074.3, whole genome shotgun sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-30C2H2-like zinc finger protein