PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01012150001 | ||||||||
Common Name | VIT_01s0011g01190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 26120.1 Da PI: 5.8495 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd ll ++v ++G g+Wk I ++ g++R++k+c++rw++yl GSVIVT01012150001 18 KGTWSEEEDRLLREYVDKYGQGNWKHITSKTGLRRCRKSCRLRWLNYL 65 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 71 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +Ed+l+++++++lG++ W++Ia +++ gRt +++k++w++yl GSVIVT01012150001 71 RGSFGVDEDDLIIRLHRLLGNR-WTLIAGRIP-GRTSNDIKNYWNTYL 116 789999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.768 | 13 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.24E-29 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-15 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.94E-11 | 20 | 65 | No hit | No description |
SMART | SM00717 | 9.1E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.539 | 70 | 120 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.3E-15 | 71 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 73 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-9 | 77 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0004709 | anatomy | axillary bud | ||||
PO:0025532 | developmental stage | bud burst stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MKRREREDHH HSNTALRKGT WSEEEDRLLR EYVDKYGQGN WKHITSKTGL RRCRKSCRLR 60 WLNYLRPDIK RGSFGVDEDD LIIRLHRLLG NRWTLIAGRI PGRTSNDIKN YWNTYLSKKI 120 QSEADKSAGL VKHNTCTSAV HSETLGSEFE TCSEQKQGDE EEEDTVSFWR RLLLEGEYRE 180 LDLRVKNKEI LQVEHEEEDD DDLFQGLDDL LHDVDILDCF A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 13 | 120 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM466536 | 1e-120 | AM466536.2 Vitis vinifera contig VV78X254327.10, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019078505.1 | 1e-161 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9FNV9 | 5e-51 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | D7T9Q4 | 1e-159 | D7T9Q4_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g01190.t01 | 1e-160 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-53 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01012150001 |
Publications ? help Back to Top | |||
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