PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01012149001
Common NameVIT_01s0011g01200
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 209aa    MW: 24604.3 Da    PI: 9.9011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01012149001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-19956148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEd ll ++vk++G ++Wk Ia++ g++R++k+c++rw++yl
  GSVIVT01012149001  9 KGCWTQEEDSLLRKYVKEFGEENWKHIAAKSGLRRCRKSCRLRWLNYL 56
                       799*******************************************97 PP
2Myb_DNA-binding48.42.2e-1562107148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++ ++Ed+l+ +++++lG++ W+ Ia +++ gRt++++k++w +yl
  GSVIVT01012149001  62 RGNFGADEDDLIMRLHRLLGNR-WSMIAGRIP-GRTPNEIKNYWKSYL 107
                        899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.318156IPR017930Myb domain
SuperFamilySSF466891.25E-287103IPR009057Homeodomain-like
SMARTSM007172.6E-15858IPR001005SANT/Myb domain
PfamPF002498.2E-17956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231163IPR009057Homeodomain-like
CDDcd001673.52E-111256No hitNo description
PROSITE profilePS5129424.89557111IPR017930Myb domain
SMARTSM007171.8E-1361109IPR001005SANT/Myb domain
PfamPF002497.5E-1462107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2364111IPR009057Homeodomain-like
CDDcd001673.64E-864107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGCPTALRKG CWTQEEDSLL RKYVKEFGEE NWKHIAAKSG LRRCRKSCRL RWLNYLRPNI  60
KRGNFGADED DLIMRLHRLL GNRWSMIAGR IPGRTPNEIK NYWKSYLSKK IASETNKNSV  120
PVKHRTQSSA MDAERMGSAS ERKQGKEEEE DTVAFWRRLL SEAEYKEKFV WHDSCIPSIQ  180
VQLFWFLSYP SFLFLWMLWM ACDLSLNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-2591272119MYB3
3zqc_D4e-2591272119MYB3
3zqc_G4e-2591272119MYB3
3zqc_J4e-2591272119MYB3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.296320.0inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4428541e-150AM442854.2 Vitis vinifera contig VV78X097044.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275704.11e-124PREDICTED: transcription factor MYB114
SwissprotQ9FNV94e-47MY113_ARATH; Transcription factor MYB113
TrEMBLD7T9Q31e-153D7T9Q3_VITVI; Uncharacterized protein
STRINGVIT_01s0011g01200.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-49myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]