PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01012110001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29674.6 Da PI: 7.6636 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtfskRr g++KKA+ELSvLCda++ +iifsstgkl ey+s GSVIVT01012110001 10 RIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCS 59 8***********************************************96 PP | |||||||
2 | K-box | 77.2 | 4.4e-26 | 88 | 174 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e+l++e++++++e++nLq ++ ++ G+dL+s+++k+L++LeqqLe+s+kk+R++K++ll +qi++lq+k k+l++en+++ + ++ GSVIVT01012110001 88 AIEQLHNEITRMRNETHNLQLSLQRYTGDDLSSIQFKDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQ 174 56899***************************************************************************9876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.034 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.21E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-32 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-25 | 88 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.364 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRGKIAIRR IENNTNRQVT FSKRRGGLFK KAHELSVLCD AQIGLIIFSS TGKLSEYCSL 60 PSSMEQIIRR YQRVTGTHIS KQDNRVGAIE QLHNEITRMR NETHNLQLSL QRYTGDDLSS 120 IQFKDLEELE QQLEHSIKKV RARKYQLLQQ QIDNLQRKAK MLEDENEQIC HWIQEKQQVA 180 AMEQQQLGIE LKPVEEQQVM EQFPFSGEEQ PNSVLQLATL SPHFYPYRLQ PTHPNLQDLT 240 LQYPGFGSIG TTPTND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 86 | 1 | 84 | MEF2C |
5f28_B | 1e-20 | 1 | 86 | 1 | 84 | MEF2C |
5f28_C | 1e-20 | 1 | 86 | 1 | 84 | MEF2C |
5f28_D | 1e-20 | 1 | 86 | 1 | 84 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM429295 | 1e-135 | AM429295.2 Vitis vinifera contig VV78X018015.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010648959.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X1 | ||||
Refseq | XP_010648963.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X1 | ||||
Refseq | XP_010648968.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X1 | ||||
Refseq | XP_010648971.1 | 0.0 | PREDICTED: MADS-box protein FBP24 isoform X1 | ||||
Swissprot | Q9ATE5 | 5e-87 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A438E363 | 0.0 | A0A438E363_VITVI; MADS-box protein FBP24 | ||||
STRING | VIT_01s0011g01560.t01 | 1e-156 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 7e-74 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01012110001 |
Publications ? help Back to Top | |||
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