PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011954001 | ||||||||
Common Name | LOC100266255, VIT_01s0011g02990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 431aa MW: 48383.6 Da PI: 4.7046 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.1 | 4.4e-33 | 55 | 194 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+e++++ L+k v + ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ GSVIVT01011954001 55 LPRGVKFDPSDQEIIWHLLAK-VGVGNleahpfIDEFIPtVEEDdGICYTHPQNLP-GVKQDGSAAHFFHQAIKAYNTGTRKRRKIHgdvfg 144 799************766655.554442454443332222444435**********.777888999******************86555555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v+ +g + g+kk++v+y r k+ekt+Wvmh+y+l GSVIVT01011954001 145 DVRWHKTGKTKPVIL-DGVQRGCKKIMVLYasIVRGGKPEKTNWVMHQYHL 194 888************.99************5534777778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-39 | 40 | 213 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.516 | 55 | 213 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-13 | 56 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MSWLVDSNRF ATKIKNASGT RETERVKWKS NPSRACPNCQ HIIDNSDVTQ EWPGLPRGVK 60 FDPSDQEIIW HLLAKVGVGN LEAHPFIDEF IPTVEEDDGI CYTHPQNLPG VKQDGSAAHF 120 FHQAIKAYNT GTRKRRKIHG DVFGDVRWHK TGKTKPVILD GVQRGCKKIM VLYASIVRGG 180 KPEKTNWVMH QYHLGTGEDE KDGEYVISKV FYQQQQIKQS DKIEQDFPES SGALIAKVDP 240 VTPKSATPEH PLTERRNSDF NPGQESPIAC MDSSVQQPDM GHLEGEVQTE CEQIDCQNIL 300 KAENRVDEVL DHNDNHGEEE AKWWDNESQF LLDSQQLVEG LSICDEFLQS QSPNREGHEN 360 GNDGHVTSKP RLSDYANLGA EDLKKDLEDC QDLVLDPANI ELDTPPDFRL SQLEFGSQDS 420 FIAWGGEQGG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.16159 | 0.0 | bud| inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ384759 | 0.0 | FQ384759.1 Vitis vinifera clone SS0AEB4YJ10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281522.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_010647959.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | D7T997 | 0.0 | D7T997_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g02990.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8264 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011954001 |
Entrez Gene | 100266255 |