PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011902001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 346aa    MW: 39049.6 Da    PI: 5.578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-2093142154
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                        s+y+GVr++k +g+W+AeIrd +     r  r++lg++ t+eeAaka++  r+++e
  GSVIVT01011902001  93 SKYRGVRQRK-WGKWAAEIRDpF-----RgVRVWLGTYNTPEEAAKAYESKRLEFE 142
                        89*******9.**********66.....56**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1793144IPR016177DNA-binding domain
PfamPF008474.3E-1493143IPR001471AP2/ERF domain
CDDcd000181.00E-2393149No hitNo description
SMARTSM003807.0E-2294157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2394149IPR001471AP2/ERF domain
PROSITE profilePS5103220.8994151IPR001471AP2/ERF domain
PRINTSPR003672.3E-1095106IPR001471AP2/ERF domain
PRINTSPR003672.3E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MPFKRAKEIC SDFKMRKIRV ICYDPEATDS SSSEDEGGIS KREKRGKRIV REINLPVAGS  60
PQSNAIETES SCQDSNNGGK NPKKRFLRKP PSSKYRGVRQ RKWGKWAAEI RDPFRGVRVW  120
LGTYNTPEEA AKAYESKRLE FEAMAASANK SQNVSSSTST SHYNGGGHGT DTTKEGVGTN  180
LIHANGAEQQ KPISDFAEEP LMAPPIGQEL NMEAEFESFF DDNNWGRILD DFNCLDDLRI  240
FGFDNEEPSD LPDFDFDLGN DDACVSDFYL FVCRETWRGM SSLYKERESS GFSCAVRAVQ  300
GLSILNPPWR VATGSPQFCS FAPPFSFYKF YIYIYKFYMF GVQFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-12931491370Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.188810.0bud| cell culture| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4731890.0AM473189.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X194508.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647696.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_010647698.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_010647701.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_010647706.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A438ECW81e-180A0A438ECW8_VITVI; Ethylene-responsive transcription factor ERF118
TrEMBLF6HEX11e-180F6HEX1_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03470.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.26e-34ERF family protein