PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011897001
Common NameLOC100264474, VIT_01s0011g03520
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family CO-like
Protein Properties Length: 433aa    MW: 47784.7 Da    PI: 5.4047
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011897001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.44e-101659340
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  GSVIVT01011897001 16 ARACDSCIRKRARFYCAADDAFLCQACDMSVHSAnplarrHERV 59
                       578*****************************667888888876 PP
2CCT682.5e-23376419144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  GSVIVT01011897001 376 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 419
                        9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.3911461IPR000315B-box-type zinc finger
SMARTSM003369.6E-131461IPR000315B-box-type zinc finger
PfamPF006433.7E-81659IPR000315B-box-type zinc finger
CDDcd000211.83E-101761No hitNo description
PfamPF062037.3E-18376418IPR010402CCT domain
PROSITE profilePS5101716.083376418IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MISEKNVANA VGGKTARACD SCIRKRARFY CAADDAFLCQ ACDMSVHSAN PLARRHERVR  60
LKTASLKLPG ADSLENSMPS WHQGFTRKAR TPRHGKPAAH PAFKSDELTR NPLPFVPEIG  120
ADETSYDDNE EQLLYRVPIF DPFVAELCAS TNSNEAVTTV ANDTETADVT GSETKALVAG  180
RGHDVDSLHG FLPSDMDLAE FAADVESLLG KGLDNESFGM EGLGLIDCKE KESVEYSLHS  240
GRVKLEEEED IGGVMACQAD AEIDMTREPF ELNFDYGSPA TCEEEEEKVA VGAMDMNNKV  300
DDPKKKNKIL LRLDYEAIIT AWASQGSPWT NGHRPELDPD DCWPDCLGTC GIQVHHPYGE  360
FGGMGEQQAA MGDGGREARV SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRAS  420
FGGPAAFPLL NK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386402RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.63570.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3933300.0FQ393330.1 Vitis vinifera clone SS0AFA26YI20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282578.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLD7T9490.0D7T949_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03520.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-106B-box type zinc finger protein with CCT domain