PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011896001 | ||||||||
Common Name | LOC100259299, VIT_01s0011g03530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26846.7 Da PI: 9.5227 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.7 | 1.6e-27 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++dC++ p++ p+ q++++ +++k++G++ +++l++a p++ r+++++sl++eA+ r+ +P+yG+vg+++++ ++ GSVIVT01011896001 4 SCNGCRVLRKACSQDCIIKPCLewiknPDFQANATLFLAKFYGRAGLINLINAGPQQLRPAIFRSLLWEACGRVVNPIYGSVGLLWSGDWNR 95 6*****************************************************************************************99 PP DUF260 88 eqlkaelal 96 + +++++l GSVIVT01011896001 96 CLDAVDAVL 104 988877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.907 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-22 | 4 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRTSCNGCRV LRKACSQDCI IKPCLEWIKN PDFQANATLF LAKFYGRAGL INLINAGPQQ 60 LRPAIFRSLL WEACGRVVNP IYGSVGLLWS GDWNRCLDAV DAVLRGVPIA RKPSEATSSS 120 PSDHPVKAYD IRHVSKDFKF PTTENLNRVT APAPKPFKRS SKSKPKPQAS LVFDFATKPA 180 ADQSDKFCDV RLPWPSSHEF NQTPSHEPSL GYHLEWLTKL DTESDKSKVK LELTLGSGTN 240 F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382880 | 0.0 | FQ382880.1 Vitis vinifera clone SS0ABG3YK21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282586.1 | 1e-180 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 1e-69 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A438ECJ9 | 1e-178 | A0A438ECJ9_VITVI; LOB domain-containing protein 42 | ||||
TrEMBL | D7T948 | 1e-178 | D7T948_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03530.t01 | 1e-179 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-69 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011896001 |
Entrez Gene | 100259299 |