PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011895001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 386aa MW: 43172.7 Da PI: 8.8093 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.4 | 3e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++dC l+p++ p++q++++ +++k++G++ +++ll+a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++++++ GSVIVT01011895001 4 SCNGCRVLRKGCSDDCSLRPCLewiktPESQANATVFLAKFYGRAGLMNLLNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWNH 95 6******************************************************************************************* PP DUF260 88 eqlkaelallke 99 +q +++++l ++ GSVIVT01011895001 96 CQNAVDAVLGGS 107 ***999887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.728 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-24 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCS LRPCLEWIKT PESQANATVF LAKFYGRAGL MNLLNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWNHCQNAV DAVLGGSQIM EVPCDTAAIR 120 PILPLKAYDI RHLSKDANSP HDLHKAKTRS RFKRCGARSK PHLDSAEFCN PGWNQFSPVD 180 YNRTPSHDSS LIQQETDSMF SVETVEASLA TPPKPNQLLK SDGQTDKTEA GLELTLGFYP 240 ISRPHASFSS CCFSFILSHF LFLSPSFKSS ISLVFGCIIE TEKMDTQKYI HMLSKSFESQ 300 SMTITKSGNS IYKKYKHVVQ SISIFNLRPS PKLAFHQLLS RDVLLQTNWI STAALNQSVL 360 MGDMNEALLH SKMWFVIKYA FLLAW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.4617 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468505 | 0.0 | AM468505.2 Vitis vinifera contig VV78X170020.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282602.1 | 0.0 | PREDICTED: LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 3e-81 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A438ED37 | 0.0 | A0A438ED37_VITVI; LOB domain-containing protein 41 | ||||
TrEMBL | F6HEW8 | 0.0 | F6HEW8_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03540.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-83 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011895001 |