PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011873001 | ||||||||
Common Name | LOC100264677, VIT_01s0011g03720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26953.1 Da PI: 7.7879 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.4 | 2.6e-08 | 133 | 180 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + k + a +L ++Y++sLq GSVIVT01011873001 133 SHSLAERVRREKINEKLRCLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 180 8*************************8....355888888888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-16 | 127 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.02E-11 | 127 | 184 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-16 | 129 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.218 | 129 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-5 | 133 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-8 | 135 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNSNMELMNN RSAPENSHMN GHGFMAFSNV GFSIHHQQEF PVNFRDNTQS PVHAGGLSAV 60 QVLQFSSQPG DFGQETKTGK VNFVSSPPAS GSEFLGDNKN LGGRKRKRSN ERENNKPREV 120 IHVRAKRGQA TDSHSLAERV RREKINEKLR CLQDLVPGCY KTMGMAVMLD VIINYVQSLQ 180 NQIEFLSMKL SAASTFYDFN SSEAEALETM QGTNAYEVHE VERSVKEGYG GPSHLHSTWP 240 F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.14218 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ394803 | 0.0 | FQ394803.1 Vitis vinifera clone SS0AFA19YK12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279412.1 | 0.0 | PREDICTED: transcription factor bHLH75 | ||||
Swissprot | A4D998 | 6e-59 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | A0A438ELB2 | 0.0 | A0A438ELB2_VITVI; Transcription factor bHLH75 | ||||
TrEMBL | F6HFN6 | 0.0 | F6HFN6_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03720.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 3e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011873001 |
Entrez Gene | 100264677 |
Publications ? help Back to Top | |||
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