PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011872001
Common NameLOC100259502, VIT_01s0011g03730
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 296aa    MW: 33584 Da    PI: 8.5939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011872001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171966148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  GSVIVT01011872001 19 RGPWTLEEDTLLIHYIACHGEGRWNLLAKCAGLKRTGKSCRLRWLNYL 66
                       89********************************************97 PP
2Myb_DNA-binding51.81.8e-1672115146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSVIVT01011872001  72 RGNLTPQEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 115
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0321466IPR017930Myb domain
SuperFamilySSF466897.49E-3117113IPR009057Homeodomain-like
SMARTSM007171.4E-141868IPR001005SANT/Myb domain
PfamPF002492.9E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-232073IPR009057Homeodomain-like
CDDcd001675.53E-112166No hitNo description
PROSITE profilePS5129425.44567121IPR017930Myb domain
SMARTSM007175.7E-1571119IPR001005SANT/Myb domain
PfamPF002491.9E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2374120IPR009057Homeodomain-like
CDDcd001677.27E-1176115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATVAKRINN SSEEIELRRG PWTLEEDTLL IHYIACHGEG RWNLLAKCAG LKRTGKSCRL  60
RWLNYLKPDI KRGNLTPQEQ LLILELHSKW GNRWSRIAQH LPGRTDNEIK NYWRTRVQKQ  120
ARQLKIESDS KRFIDAVRRF WMPRLLQKME QASTSSTAAD TVTTNTTNTT TVNSQSSTIP  180
ALLPNQITVS SSPPQSSVTS PSISTSDSMK IPLLPEISEH PTSPSQAIGN TVHNNPVIND  240
CSYVDSSVYD MEPLAPSSAI GTYDFSLFSD YQMAENDWID LWNVDKLWYK AFLWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25161214108B-MYB
1h8a_C6e-251612124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302400.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474220.0AM447422.2 Vitis vinifera contig VV78X043971.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279433.10.0PREDICTED: transcription factor MYB24
SwissprotQ9C9G78e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A438JUD30.0A0A438JUD3_VITVI; Transcription factor MYB62
TrEMBLF6HFN50.0F6HFN5_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03730.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-84myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]