PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011650001
Common NameVIT_01s0011g05830
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 429aa    MW: 46628.3 Da    PI: 6.7843
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011650001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.41.6e-28219272155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  GSVIVT01011650001 219 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 272
                        79*******************.********************************8 PP
2Response_reg77.93.5e-26351431109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + +++l+q+l++  y +v+++++++ al++l+ek+  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + +
  GSVIVT01011650001  35 VLVVDDDVTCLKILEQMLRRCLY-HVTTCSQATIALNILREKKgcFDIVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSADGRTSAVMRGI 124
                        89*********************.*******************************************6644.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ +eel +
  GSVIVT01011650001 125 RHGACDYLIKPIREEELKN 143
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.2E-16210427IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-4232169No hitNo description
SuperFamilySSF521729.68E-3632161IPR011006CheY-like superfamily
SMARTSM004481.2E-2933145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.24834149IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-2335143IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.65E-2736148No hitNo description
SuperFamilySSF466893.67E-20216276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-30216277IPR009057Homeodomain-like
PROSITE profilePS5129411.209216275IPR017930Myb domain
TIGRFAMsTIGR015571.4E-24219272IPR006447Myb domain, plants
PfamPF002495.3E-7221270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAALLKVPPQ SSGGTNGSCK ADVVVSDQFP AGLRVLVVDD DVTCLKILEQ MLRRCLYHVT  60
TCSQATIALN ILREKKGCFD IVLSDVHMPD MDGYKLLEHV GLEMDLPVIM MSADGRTSAV  120
MRGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKEHE HSGSLEDNDR HKRGGEDAEY  180
ASSVNEGAEG ILKGQKKRRD SKDEDDGELE NEDPSTSKKP RVVWSVELHQ QFVSAVNQLG  240
IDKAVPKRIL ELMNVPGLTR ENVASHLQKF RLYLKRLSGV AQQQGGIPNS FCGPVEPNVK  300
LGSLGRFDIQ ALAASGQIPP QTLAALQAEL LGRPTSNLVL PAMDQPALLQ ASLQGPKCIP  360
VEHGVAFGQP LVKCQTNISK HFPPTVVSTE DVPSGFGAWP SNSLGTVGTS GSLGGLSAQN  420
NNILMDMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22215278164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.103430.0bud| cell culture| fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3806370.0FQ380637.1 Vitis vinifera clone SS0ACG43YJ18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651276.10.0PREDICTED: two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-175ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-175ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLF6HFD20.0F6HFD2_VITVI; Uncharacterized protein
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-134response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]