PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011589001
Common NameVIT_01s0011g06380
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BBR-BPC
Protein Properties Length: 309aa    MW: 34320.6 Da    PI: 10.5103
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011589001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind55.13.6e-171597173
          GAGA_bind  1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernka 73
                       mdddg  + rn+gyyepa  +k +l+lqlmss+aerd+k+    r++ l + + ++a+++rd         m++  rd+++++r+k 
  GSVIVT01011589001 15 MDDDGGLNmRNWGYYEPA--FKGHLNLQLMSSVAERDTKPflpgRDSPL-MVSANGAFHPRDcmvseapvhMDY-VRDSWINQRDKF 97
                       999999999********9..***********************999999.999*********************.9*******9985 PP
2GAGA_bind278.14.2e-85117274142301
          GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233
                        + +ke    kkr  +  pk++k +k+kk ++++k+ ++++   +r+k  kk++d+v+ng+++D+s++P+PvCsCtG ++qCY+WG+GGWqSa
  GSVIVT01011589001 117 DLKKEGGPLKKRTGGGAPKTPKIRKTKKGPSVPKDGTNSSV--QRVKPAKKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSA 206
                        4556667778899999************9999977777666..79*********************************************** PP

          GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        CCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL+ hWAkHGtnkfvtir
  GSVIVT01011589001 207 CCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGTNKFVTIR 274
                        *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.6E-2215108IPR010409GAGA-binding transcriptional activator
SMARTSM012265.9E-16315274IPR010409GAGA-binding transcriptional activator
PfamPF062179.1E-87111274IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPNAMRKRKW KSSLMDDDGG LNMRNWGYYE PAFKGHLNLQ LMSSVAERDT KPFLPGRDSP  60
LMVSANGAFH PRDCMVSEAP VHMDYVRDSW INQRDKFLNI LPGNSNFQRV GRMEDSDLKK  120
EGGPLKKRTG GGAPKTPKIR KTKKGPSVPK DGTNSSVQRV KPAKKNMDVV INGIDMDISG  180
IPIPVCSCTG NPQQCYRWGC GGWQSACCTT SISMYPLPMS TKRRGARIAG RKMSQGAFKK  240
VLEKLAAEGY NFANPIDLRR HWAKHGTNKF VTIRCFKKPK AATDPEIHPP TPPLFVSFSL  300
SASLQYSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.33780.0flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4312430.0AM431243.2 Vitis vinifera contig VV78X253554.4, whole genome shotgun sequence.
GenBankEU5977420.0EU597742.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC1-like gene, complete cds.
GenBankEU5977430.0EU597743.1 Vitis vinifera GAGA-binding transcriptional activator BBR/BPC1-like mRNA, complete cds.
GenBankFQ3950450.0FQ395045.1 Vitis vinifera clone SS0AFA18YB02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076461.10.0PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
RefseqXP_019076625.10.0PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
SwissprotQ9SKD01e-101BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLF6HFA40.0F6HFA4_VITVI; Uncharacterized protein
STRINGVIT_01s0011g06380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-104basic pentacysteine1