PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011465001
Common NameVIT_14s0108g01220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 311aa    MW: 34209.2 Da    PI: 4.9221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011465001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-194594255
                AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  GSVIVT01011465001 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                       789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-3244101No hitNo description
Gene3DG3DSA:3.30.730.101.4E-2745101IPR001471AP2/ERF domain
PROSITE profilePS5103219.55945102IPR001471AP2/ERF domain
PfamPF008476.7E-144594IPR001471AP2/ERF domain
SMARTSM003808.9E-3645108IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1945102IPR016177DNA-binding domain
PRINTSPR003673.8E-84657IPR001471AP2/ERF domain
PRINTSPR003673.8E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MARKRKAGEC VEEKIPSEGN MAWDEMVKEA AAAAALGGAR RARKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPCSPSSSS TPALPSKITN  120
LLLHRLKTRS NASASSASVP INHEQKQLEE YREEVTDFSD TQFTDFLNDP EDYVTCNNII  180
ADASPSASEY MTISPDPSFT KESCGSKEPD LDCNWTDVVE SSSGDGTFAA MKRMVYERKF  240
SASLYAFNGI PECLKLKLGS GNVNGKSGMS DQLTKLQDAC NKNQEKDENN NDGELSLWSS  300
LDLPPICFVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14451011471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4318280.0AM431828.1 Vitis vinifera contig VV78X014636.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283983.11e-170PREDICTED: ethylene-responsive transcription factor RAP2-2
RefseqXP_019080714.11e-170PREDICTED: ethylene-responsive transcription factor RAP2-2
TrEMBLD7SXG10.0D7SXG1_VITVI; Uncharacterized protein
STRINGVIT_14s0108g01220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11