PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011436001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 438aa    MW: 47790.4 Da    PI: 7.722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011436001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-16172217147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  GSVIVT01011436001 172 RGHWRPAEDSKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 217
                        899*****************************.***********996 PP
2Myb_DNA-binding52.11.5e-16224267146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r ++T+eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  GSVIVT01011436001 224 RRAFTEEEEERLMAAHRWYGNK-WAMIARLFP-GRTDNAVKNHWHV 267
                        678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.367167218IPR017930Myb domain
SMARTSM007173.9E-14171220IPR001005SANT/Myb domain
SuperFamilySSF466893.22E-27172265IPR009057Homeodomain-like
PfamPF002499.9E-16172217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-26173225IPR009057Homeodomain-like
CDDcd001674.07E-13175216No hitNo description
PROSITE profilePS5129425.937219273IPR017930Myb domain
SMARTSM007172.0E-12223271IPR001005SANT/Myb domain
PfamPF002495.4E-13224266IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-20226272IPR009057Homeodomain-like
CDDcd001672.87E-10226266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MACEKDVSTL RLRPLSSLHV CRYSKLSISM FSPCRRPISL ILDSTFCHQE NDGMAKQCHI  60
YKPFSPSSSM GVFEDMGSLS ISPSYGAYCC KSSDQRGLHM GFPLMGNCSS SLDDTQNSEG  120
GGGDGKGSET SDGFGENSGV AMEIINKGIN LNEERPNESS GLDGGQSKLC ARGHWRPAED  180
SKLRELVALY GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFTEE EEERLMAAHR  240
WYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKYREQSSAY RRRKMNQAAH KKLEVGGGSY  300
VCRDTSIRTE HNSLNVCNGN NFIKSSHHFP FAAHMGGGGS IINGSHMTSS EEAVSSGGGD  360
WLVGASSSSN TMLPPHHTGP CPSQTPFHFL SDSVASTSQV SVSEPSSSTS AAENMANTHF  420
EATISPPFID FLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331722727107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4520540.0AM452054.2 Vitis vinifera contig VV78X006594.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661075.10.0PREDICTED: transcription factor MYB35
RefseqXP_010661076.10.0PREDICTED: transcription factor MYB35
TrEMBLF6H5U70.0F6H5U7_VITVI; Uncharacterized protein
STRINGVIT_14s0108g01010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-75myb domain protein 105