PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011420001
Common NameVIT_14s0108g00860
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 354aa    MW: 39332.4 Da    PI: 8.2468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011420001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52141411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
  GSVIVT01011420001  14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 104
                        579***************************.89***************8888999************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  GSVIVT01011420001 105 YSSdGTRCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141
                        **956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5813172IPR003441NAC domain
PROSITE profilePS5100556.8314172IPR003441NAC domain
PfamPF023651.4E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAERNDTDKM DDVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT RCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPSLGDSAPP KKLLDKSLPP NDSWAICRIF KKTNSMAQRA  180
LSHSWVSPPF PATAMTADIL SHGAHCTQFS SENISCTTEN GSSIDLCCNN DLQQASPASF  240
SALDIPSYKA INPAACKPSI IDFGGPQQQF NGFSISLPED LQGNIHTGEE DTGFRKSASA  300
GQANNPCGNI RSIGFPFSLP SNVADPWKLN LPWDSPPCPS EMSTSYSTNK GYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5411751171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4492521e-168AM449252.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X128216.43, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278256.20.0PREDICTED: putative NAC domain-containing protein 94 isoform X2
SwissprotQ9FIW51e-105NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLD7SXC50.0D7SXC5_VITVI; Uncharacterized protein
STRINGVIT_14s0108g00860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-104NAC domain containing protein 94