PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011417001
Common NameLOC100257755, VIT_14s0108g00830
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 308aa    MW: 34429.2 Da    PI: 5.8855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011417001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  GSVIVT01011417001 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding47.25.2e-1567112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T  E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSVIVT01011417001  67 RGNFTDHEERMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.347965IPR017930Myb domain
SuperFamilySSF466891.98E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002493.0E-161461IPR001005SANT/Myb domain
CDDcd001672.18E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2465117IPR009057Homeodomain-like
SMARTSM007173.5E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.75666116IPR017930Myb domain
PfamPF002492.2E-1367112IPR001005SANT/Myb domain
CDDcd001672.61E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEERMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
TGSSSDGHSR DVSLASQSIS RGQWERRLQT DIHMAKQALH EALSLEKPHT SSYASSTENI  180
ARLLEGWMRN SPKQARASSA TTQNSFINTA GTDSTSSEGT PSAANNEDIE LTEAYEMLFG  240
FDSLDSSNSE ISQSKSPEAS FFQEESKPDL SDQVPLSFLE KWLFEEGGAQ GKEDLTDISL  300
DESPDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-251411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-251411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-251411627128MYB TRANSFORMING PROTEIN
1mse_C1e-25141164105C-Myb DNA-Binding Domain
1msf_C1e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.264830.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4829560.0AM482956.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X096604.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283575.10.0PREDICTED: myb-related protein 306
SwissprotP813921e-120MYB06_ANTMA; Myb-related protein 306
TrEMBLF6H5T60.0F6H5T6_VITVI; Uncharacterized protein
STRINGVIT_14s0108g00830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-110myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]