PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01011377001 | ||||||||
Common Name | VIT_14s0108g00390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 284aa MW: 32096 Da PI: 6.6771 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.4 | 2.2e-17 | 73 | 126 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSVIVT01011377001 73 KKRRLNLEQVKTLEKNFELGNKLEPERKMQLARTLGLQPRQIAIWFQNRRARWK 126 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.6 | 5.5e-41 | 72 | 162 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++n++L++++++L++el GSVIVT01011377001 72 EKKRRLNLEQVKTLEKNFELGNKLEPERKMQLARTLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKADNDALQAQNKKLHAEL 162 69**************************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 50 | 129 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-19 | 60 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.4E-17 | 71 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-15 | 73 | 129 | No hit | No description |
Pfam | PF00046 | 9.6E-15 | 73 | 126 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.1E-5 | 99 | 108 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 103 | 126 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 108 | 124 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-14 | 128 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAFLPTDFLF QTHLEDHPPY TSHTGLPSCT PQDFHGVIPV LMKRSMSFSG VDGCEEVHGD 60 DDFSDDGSQA GEKKRRLNLE QVKTLEKNFE LGNKLEPERK MQLARTLGLQ PRQIAIWFQN 120 RRARWKTKQL EKDYDLLKRQ FEAVKADNDA LQAQNKKLHA ELLALKSREP KGVGPINLNK 180 ETDQISWSNG SEHSSGINLD ISRTTLINSP VSSQLSSKQF FPSSLRPASI TQLLQGSPRS 240 DIHCQKIDQI VQDESFCNIF SGISDQSGLW AWPEQDHFHQ NQA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 128 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ384633 | 0.0 | FQ384633.1 Vitis vinifera clone SS0AAG17YM12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661046.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 7e-84 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | D7SX88 | 0.0 | D7SX88_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0108g00390.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-86 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01011377001 |
Publications ? help Back to Top | |||
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