PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01011146001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 490aa    MW: 54860.1 Da    PI: 8.7982
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01011146001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.8e-103483851954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  GSVIVT01011146001 348 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 385
                        564459******************************88 PP
2BELL126.97.4e-41212283172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erqe+q+kkakLl++l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAl++iS++FrcLkdai++qi
  GSVIVT01011146001 212 ERQEIQMKKAKLLNMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALQTISKQFRCLKDAISGQI 283
                        79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.4E-67145281IPR006563POX domain
PfamPF075266.2E-50150280IPR006563POX domain
PROSITE profilePS5007112.098326389IPR001356Homeobox domain
SMARTSM003895.3E-9329393IPR001356Homeobox domain
CDDcd000861.36E-11329390No hitNo description
SuperFamilySSF466894.71E-17331396IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-29332396IPR009057Homeodomain-like
PfamPF059201.9E-18346385IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MKWYNNVKLA CVIFYNLVVG LVKGIPKREV GVRCLCYVFI ADDDEARAHS DFHHTRICLI  60
RPLQLLLHNS EPVDSGSKWV DSHTQIYHSS DINSKKEEIL FKIDGDSSIR SLPKPLFATT  120
AGLCDDMRIS GASSSSASGI SNGVSGMHGV ILSSKYLKAA QQLLDEVVNV GNGIKTETPS  180
KKSSSEATKT LGEGLIGGET STKRSADLST AERQEIQMKK AKLLNMLDEV EQRYRQYHHQ  240
MQIVISSFEQ AAGIGSAKTY TALALQTISK QFRCLKDAIS GQIRAANKSL GEEDGTGGKI  300
EGSRLKFVDH QLRQQRALQQ LGMIQQNVWR PQRGLPERSV SVLRAWLFEH FLHPYPKDSD  360
KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYMEEVK DHEENGSGEK TSKSEDNNLE  420
DSFQIQTRQS HEQECSSSDL NGHSCNISHW RRKCPEPAQV HAHGAIRNGR DGPRKSKETK  480
EHRCPALPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16335393563Homeobox protein Meis2
4xrm_B1e-16335393563Homeobox protein Meis2
4xrs_A1e-16335392158Homeobox protein Meis1
4xrs_B1e-16335392158Homeobox protein Meis1
5bng_A1e-16335393159Homeobox protein Meis2
5bng_B1e-16335393159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.66210.0bud| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3817200.0FQ381720.1 Vitis vinifera clone SS0ABG87YE23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266838.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_010653288.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_010653289.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_010653292.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019077195.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_019077196.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-121BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLF6H6S80.0F6H6S8_VITVI; Uncharacterized protein
STRINGVIT_08s0105g00230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-108BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]