PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010991001
Common NameLOC100259713, VIT_07s0104g01360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family CO-like
Protein Properties Length: 344aa    MW: 38221.2 Da    PI: 7.0129
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010991001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.5e-083478342
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                        r C+ ++  ++++ C +++  lC++C  ++H +     H+++pl
  GSVIVT01010991001 34 SRLCDVCDASPASILCSTDNLVLCQNCDWAKHGRslssaHDRRPL 78
                       689*****************************5589999998875 PP
2CCT62.21.6e-21299341143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        R+ a++RYkeK+ktR++eK+irYesRKa+AesR R+KGrF+k 
  GSVIVT01010991001 299 RDSAISRYKEKKKTRRYEKHIRYESRKARAESRIRIKGRFAKM 341
                        899**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000210.00282136No hitNo description
PROSITE profilePS501198.802136IPR000315B-box-type zinc finger
SMARTSM003360.044136IPR000315B-box-type zinc finger
PROSITE profilePS5011910.853278IPR000315B-box-type zinc finger
PfamPF006439.6E-63477IPR000315B-box-type zinc finger
CDDcd000212.12E-63578No hitNo description
SMARTSM003360.0363778IPR000315B-box-type zinc finger
PfamPF062038.2E-16299341IPR010402CCT domain
PROSITE profilePS5101714.743299341IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MALLYCRADS AKLCLSCDRE VHSTNQLFTK HTRSRLCDVC DASPASILCS TDNLVLCQNC  60
DWAKHGRSLS SAHDRRPLEG FSGQPSVTEL LAFVGFEDLG KKSLFCGDES EFSDFLVWDT  120
PAVVNLDDLI VSTACDHNFQ AMGVPPLPKN RGAPCGQHKA EIIHQLRQLA KIELSFDFDH  180
GDAKPPIGFQ SHIPKQLIQK ENECNSCDHE VEFVFPTYEA SAFQWCSDGS EAANQVLPSV  240
LLGSCADEKC LVPRKHSDIG GSVSHTNGSD EGKSECPVVT KTLPALPKVS VHELNSQERD  300
SAISRYKEKK KTRRYEKHIR YESRKARAES RIRIKGRFAK MDH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.120910.0flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3947020.0FQ394702.1 Vitis vinifera clone SS0AFA1YF05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268490.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLF6HQ130.0F6HQ13_VITVI; CONSTANS-like protein 13
STRINGVIT_07s0104g01360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-80B-box type zinc finger protein with CCT domain