PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010980001
Common NameLOC100245975, VIT_07s0104g01460
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 476aa    MW: 51019.2 Da    PI: 9.0934
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010980001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.7e-115075227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       + + C ++++tG+C +G+rC+++H++
  GSVIVT01010980001 50 GVADCVYYMKTGFCGFGSRCRYNHPR 75
                       7899********************96 PP
2zf-CCCH37.73.4e-1296120327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C+f+++tGtCk+G++C+F+H++
  GSVIVT01010980001  96 EPACQFYLKTGTCKFGASCRFHHPR 120
                        689********************96 PP
3zf-CCCH36.96.3e-12142166327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+++++tG+Ck+G +CkF+H++
  GSVIVT01010980001 142 EKECSYYLKTGQCKFGITCKFHHPQ 166
                        689********************97 PP
4zf-CCCH34.43.7e-11297322227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++ +C++++rtG Ck+G++C+++H++
  GSVIVT01010980001 297 GQQECQYYLRTGDCKFGSSCRYHHPR 322
                        6789********************96 PP
5zf-CCCH37.54.1e-12343367226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +  +C f++++G+Ck+G++CkF H+
  GSVIVT01010980001 343 GVQPCTFYLQNGYCKFGSTCKFDHP 367
                        6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2114876IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25393121IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-499120IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6140167IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.976295323IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4301323IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7341368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629341369IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9343367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7343372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-6345368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MELYGRAPAR DGSQSDPSVE WSPVRAVSGL EESMWRLGLS SRESYPERPG VADCVYYMKT  60
GFCGFGSRCR YNHPRDRSSV STLRSGGGEY PERIGEPACQ FYLKTGTCKF GASCRFHHPR  120
NGGGSMSHVS LNIYGYPLRL GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPASAPTFY  180
PTVQSPSVPT PTQYGGTSTS WRVPRPPVLP GSYVQGPYGP VLFPPGVVPI PGWSPYSTPV  240
SPVLSPGAQP TVGAGSVYGV TQLPSTHTLA GPYASLPSSA GPSSSNQKEQ VFPERPGQQE  300
CQYYLRTGDC KFGSSCRYHH PREWVVPKTN CVLSPLGLPL RPGVQPCTFY LQNGYCKFGS  360
TCKFDHPLGN MRYSPSASSL TDMPVAPYPV GSSLATLAPS FSSSDLRPDF ISGSKKDSHS  420
TRMPSSGNTT SSSVGLIFSQ TGSVSLSDVQ LSGQSSAPLS SSRSTRQGGE VRRSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.86840.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4451560.0AM445156.2 Vitis vinifera contig VV78X067066.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652064.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLD7TP300.0D7TP30_VITVI; Uncharacterized protein
STRINGVIT_07s0104g01460.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein