PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010762001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 290aa    MW: 33863.2 Da    PI: 6.512
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010762001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.96.1e-2792183191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r e+  + +++r   +r+ tr gC+a+l++  +++gkw ++ +++eHnHel+
  GSVIVT01010762001  92 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRVEKYAN-REHRIlpSRPITREGCNAMLRIAAKDEGKWAIYGFVKEHNHELN 182
                        6******************************************9998.33332459**********************************97 PP

               FAR1  91 p 91 
                        p
  GSVIVT01010762001 183 P 183
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-2492183IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRNLRVCLVI PPFPKWVLMA STSGQGFNPS RNYRRWLDET FDGHETAEDE LSDSLDGNDD  60
MVQQSIDNLP VSLEPLEPCV GMEFESAEDA REFYEMYGRR MGFTIRNNRT RRSLKDNSII  120
GREFVCSKEG FRVEKYANRE HRILPSRPIT REGCNAMLRI AAKDEGKWAI YGFVKEHNHE  180
LNPSKMPPRR SHRIAFCEDM RGHHWYGYVI SCTSLLFNTC PKDQKDLKIR ELSTELHRER  240
KKSAAYQEQL QTILKYIEEH THRLSLKVEI VVNNLRELES EEQDCSDSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4654590.0AM465459.2 Vitis vinifera contig VV78X090921.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650572.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_010650573.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA5BNB51e-177A5BNB5_VITVI; Uncharacterized protein
TrEMBLF6HYS21e-177F6HYS2_VITVI; Uncharacterized protein
STRINGVIT_05s0102g00400.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-41FAR1 family protein