PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010629001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 274aa    MW: 30141.8 Da    PI: 8.8849
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010629001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-1592140255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r +   ++Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  GSVIVT01010629001  92 FYRGIRCR--GNKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAALALKG 140
                        79***954..68********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.43E-1892150IPR016177DNA-binding domain
PROSITE profilePS5103219.1992148IPR001471AP2/ERF domain
SMARTSM003804.8E-2792154IPR001471AP2/ERF domain
CDDcd000181.53E-2693150No hitNo description
PfamPF008471.1E-893140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2593149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MHFPIEKYTS EWSNQTLPCT PTEPRANVRP SDQPPPTPKI EVPDSSLSIV PPQDLSSPPS  60
HSSSTPTSAH PSPKNLPSPT PFSGQTAGRH PFYRGIRCRG NKWVSEIREP RKTTRIWLGT  120
YPTPEMAATA YDVAALALKG TDATLNFPNS VLSYPIPKST SASDIRAAAA RAAEAQQAKP  180
ESSESPNTTQ PKKEETTESR LQIFTFTMFL SFRPFLDNNH VGLSSIIFNP RDMGSLRILS  240
PYGFYIHLWL ANGCNGNGGH DNCNVFAWFE RKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.103410.0fruit| inflorescence| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4845480.0AM484548.2 Vitis vinifera contig VV78X077336.16, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081410.11e-121PREDICTED: ethylene-responsive transcription factor ERF027
TrEMBLF6HP681e-120F6HP68_VITVI; Uncharacterized protein
STRINGVIT_16s0100g00400.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.11e-27ERF family protein