PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010522001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 422aa MW: 46180.9 Da PI: 8.2675 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.7 | 5.1e-41 | 91 | 167 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+++v++ g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ GSVIVT01010522001 91 CLVDGCKSDLSKCRDYHRRHKVCELHSKTAKVTIGGHEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 167 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-33 | 84 | 152 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.624 | 88 | 165 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 89 | 170 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.3E-30 | 91 | 164 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MGYNLKTPSW DLAELQKEGI PSVAPFLGSS SSLGGGQETK GDCLVDLKLG RLSDLGDGSV 60 NSFKSSMMES SSSGSAKRAR TPGHGTQVVS CLVDGCKSDL SKCRDYHRRH KVCELHSKTA 120 KVTIGGHEQR FCQQCSRFHS LGEFDEGKRS CRKRLDGHNR RRRKPQPEPL SITSGRFLSS 180 HQGTRLLAFS NPQVFPASAG VTSAWAGNIK TENDAVLYNS HQQLNFMDRQ NSFPESFSRS 240 YRGKQFPFLQ GPNPTLPGTS VCQPLLDPMI SSDRALSLLS SPPPETQEIG LSRMVQQNPI 300 PPAQSLIPSL HYTGLSQYAS SQGMGGSVGS VLVSDGSSNA NLHCPAIFQL GPDGSSTNSP 360 HQTLSFSWEY NVLSLSEFIP PELWNFSVDN ELGSRFYLYI YIWIPFLDLF SSLSSNLWML 420 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-27 | 91 | 164 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 164 | KRSCRKRLDGHNRRRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.14951 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM459992 | 0.0 | AM459992.1 Vitis vinifera contig VV78X036999.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656129.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_019077816.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-55 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A438IRP2 | 0.0 | A0A438IRP2_VITVI; Teosinte glume architecture 1 | ||||
TrEMBL | A5BHV4 | 0.0 | A5BHV4_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0010g03910.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-51 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010522001 |