PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010496001 | ||||||||
Common Name | LOC100254075, VIT_01s0010g03710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | SBP | ||||||||
Protein Properties | Length: 419aa MW: 45940.3 Da PI: 8.8028 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.7 | 1.2e-41 | 127 | 204 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h+vCe h+k+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ GSVIVT01010496001 127 RCQVEGCNLDLSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQP 204 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.5E-32 | 121 | 189 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.71 | 125 | 202 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.19E-38 | 126 | 206 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-31 | 128 | 201 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MISFSMMEWN AKAPVQWDWE NLDIFNAKST EIPKKLQSDW EIEGEGGIDT GSFYSSGCGA 60 GSGGSGSDLG HAYSSKSSKS ASIDSSSKIW RGLRANAKGS VFSVIPISSD TTAKRSRLSC 120 QNAHVSRCQV EGCNLDLSTA KDYHRKHRVC ESHTKCPKVI VGGLERRFCQ QCSRFHSLSE 180 FDEKKRSCRR RLSDHNARRR KPQPEGIQSN SARLSSFYGG KQQMSLVLSS VPIVHTRPAV 240 NPSWEGTCSK FTQTKGLVRP GNTGGIDRQL HLPGSELQNG ISTLCHDSSR LLHSKGAIAE 300 VLNQGLGDSM ISSNLDTSQD LRRALSLLST NSWGSCETQP IPSDHPMHVN QTSMPQSIMH 360 AVSQGMLHST SEHWRTELPS TDSRVHILPS QGDGNTHFQE FKLFKAPYES GFSSGQLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-27 | 128 | 201 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 200 | KKRSCRRRLSDHNARRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.21308 | 0.0 | bud| flower| inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM477084 | 0.0 | AM477084.1 Vitis vinifera contig VV78X050214.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271312.2 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X1 | ||||
TrEMBL | F6HGB1 | 0.0 | F6HGB1_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0010g03710.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 9e-53 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010496001 |
Entrez Gene | 100254075 |