PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010305001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

GRAS

Protein Properties

Length: 348aa MW: 38654.7 Da PI: 8.0596

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010305001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	152.5	3.8e-47	3	187	1	183
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 lv++L++cA++v+ +d++ a+alL++l+ +a g+++qR+a++f+++L+ rl+ ++ + + ++ ++ + + e+ a++lf+e++P + GSVIVT01010305001 3 LVHQLITCAKVVAFRDKSHASALLSELRANALVFGTSFQRVASCFVQGLSDRLSLiQSLGAVGVGGCTVKTMDITPEKEEAFRLFFEICPQI 94 68**************************************************93334444444666666566999999******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +f+hl+aN Ilea+ege+ vH++D++++ qG QW +L+++La+R+++pp sl+iTgvg +e l+ + + L+ +Ae+lg++f+f GSVIVT01010305001 95 QFGHLAANASILEAFEGESSVHVVDLGMNlgspQGQQWRSLMHSLANRAGKPPsSLQITGVGT----AAECLKDIIDELEVYAESLGMNFQF 182 *********************99875555889*********888879****....99********************* PP GRAS 179 nvlva 183 ++l++ GSVIVT01010305001 183 SMLHC 187 *9843 PP
2	GRAS	176.9	1.5e-54	191	345	216	374
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307 es ++vL+ +++lsPk vv+veq+a+hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++++++ei+n+++ceg++r+e GSVIVT01010305001 191 ESRGA---LNSVLQKIRELSPKAVVLVEQDASHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGSARVE 279 33333...447******************************************************************************* PP GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 rh++l +Wr+r+++aGF++ p++ + ++ak l+kvk dgy++ +e+g+lvlgWk++p++++S+W+ GSVIVT01010305001 280 RHQRLDQWRRRMSRAGFQSSPMK--MITEAKQWLEKVKlCDGYTIVDEKGCLVLGWKSKPIIAASCWK 345 ****************996..67899***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.665	1	326	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-44	3	187	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-52	191	345	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MKLVHQLITC AKVVAFRDKS HASALLSELR ANALVFGTSF QRVASCFVQG LSDRLSLIQS 60 LGAVGVGGCT VKTMDITPEK EEAFRLFFEI CPQIQFGHLA ANASILEAFE GESSVHVVDL 120 GMNLGSPQGQ QWRSLMHSLA NRAGKPPSSL QITGVGTAAE CLKDIIDELE VYAESLGMNF 180 QFSMLHCVVK ESRGALNSVL QKIRELSPKA VVLVEQDASH NGPFFLGRFM EALHYYSAIF 240 DSLDAMLPKY DTRRAKMEQF YFAEEIKNII SCEGSARVER HQRLDQWRRR MSRAGFQSSP 300 MKMITEAKQW LEKVKLCDGY TIVDEKGCLV LGWKSKPIIA ASCWKCS*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MKLVHQLITC AKVVAFRDKS HASALLSELR ANALVFGTSF QRVASCFVQG LSDRLSLIQS  60
LGAVGVGGCT VKTMDITPEK EEAFRLFFEI CPQIQFGHLA ANASILEAFE GESSVHVVDL  120
GMNLGSPQGQ QWRSLMHSLA NRAGKPPSSL QITGVGTAAE CLKDIIDELE VYAESLGMNF  180
QFSMLHCVVK ESRGALNSVL QKIRELSPKA VVLVEQDASH NGPFFLGRFM EALHYYSAIF  240
DSLDAMLPKY DTRRAKMEQF YFAEEIKNII SCEGSARVER HQRLDQWRRR MSRAGFQSSP  300
MKMITEAKQW LEKVKLCDGY TIVDEKGCLV LGWKSKPIIA ASCWKCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-58	10	344	25	377	Protein SCARECROW
5b3h_D	1e-58	10	344	25	377	Protein SCARECROW
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM448829	0.0	AM448829.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X169822.14, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002267538.2	0.0	PREDICTED: scarecrow-like protein 21
TrEMBL	A0A438JRC0	0.0	A0A438JRC0_VITVI; DELLA protein GAI1
STRING	Aquca_123_00013.1	0.0	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7052	11	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	2e-66	RGA-like protein 3

Link Out ? help Back to Top
Phytozome	GSVIVT01010305001