PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010300001 | ||||||||
Common Name | LOC100246057, VIT_01s0010g02230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ARR-B | ||||||||
Protein Properties | Length: 595aa MW: 66947.6 Da PI: 5.4922 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.7 | 3e-24 | 198 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl GSVIVT01010300001 198 KARVVWSVDLHQKFVRAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 251 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 78.2 | 2.9e-26 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+vdD+p+ +++l+++l+k y ev+ + +++al+ll+e++ +D+++ D++mp+mdG++ll+ e++lp+i+++ ge + + + + GSVIVT01010300001 19 VLVVDDDPTWLKILEKMLKKCLY-EVTICGLARDALNLLRERKdgYDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMKGV 108 89*********************.***************999999*******************87754.558******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ ++el++ GSVIVT01010300001 109 QHGACDYLLKPIRMKELRN 127 ****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.4E-146 | 2 | 563 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-42 | 16 | 147 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-34 | 16 | 137 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.8E-31 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.408 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.0E-23 | 19 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.15E-29 | 20 | 133 | No hit | No description |
SuperFamily | SSF46689 | 2.69E-17 | 196 | 255 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 197 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-21 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 200 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MDSAFCPPRT DVFPAGLRVL VVDDDPTWLK ILEKMLKKCL YEVTICGLAR DALNLLRERK 60 DGYDIVISDV NMPDMDGFKL LELVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI 120 RMKELRNIWQ HVFRKKINEV RDIESHESID DFQIMRNGPE QSDDGYLVSG DPTSVKKRKD 180 TENKHDDRDH CDPSSVKKAR VVWSVDLHQK FVRAVNQIGF DKVGPKKILD LMNVPWLTRE 240 NVASHLQKYR LYLSRLQKED DLKTSCGGIK HSDLSPKDST GSFGLSNLTN MHQNDAANSG 300 YGFSGNKKLV QSIDIDPKVQ EGDLKGIISL PRTEQKKMLT GEASDPQKAR SSQMGFNDSF 360 GSIEQDVNYA AFDSSISAQY SWSGEKVPEA QFQEEHRPSV QLETSFNQLP VPGPQHHIQV 420 DCLQPTLPPI SPGSSRKERD KASPAKIKPL YASYDSHHVS NVSSAGSEID LFSVQSKCQM 480 VNPQAFEPIS NITLNMRNQG HNQSGVNDLE SFQRNLISGS GSALESLEDL QVHWLQGDCN 540 PMNLGLRNIE FSDYHDQKLI TEVPFHLYDP LKLDYEYLSD LTEYPIMDQG LFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-17 | 194 | 256 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM448829 | 0.0 | AM448829.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X169822.14, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002267616.1 | 0.0 | PREDICTED: two-component response regulator ORR26 isoform X1 | ||||
TrEMBL | D7TAK2 | 0.0 | D7TAK2_VITVI; Two-component response regulator | ||||
STRING | VIT_01s0010g02230.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-131 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010300001 |
Entrez Gene | 100246057 |