PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010300001
Common NameLOC100246057, VIT_01s0010g02230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARR-B
Protein Properties Length: 595aa    MW: 66947.6 Da    PI: 5.4922
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-24198251155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  GSVIVT01010300001 198 KARVVWSVDLHQKFVRAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 251
                        68*******************.9*******************************8 PP

2Response_reg78.22.9e-26191271109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l+k  y ev+ +  +++al+ll+e++  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge + + + +
  GSVIVT01010300001  19 VLVVDDDPTWLKILEKMLKKCLY-EVTICGLARDALNLLRERKdgYDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMKGV 108
                        89*********************.***************999999*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ ++el++
  GSVIVT01010300001 109 QHGACDYLLKPIRMKELRN 127
                        ****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.4E-1462563IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.6E-4216147No hitNo description
SuperFamilySSF521726.69E-3416137IPR011006CheY-like superfamily
SMARTSM004486.8E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.40818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-2319128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.15E-2920133No hitNo description
SuperFamilySSF466892.69E-17196255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-21198251IPR006447Myb domain, plants
PfamPF002492.5E-7200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDSAFCPPRT DVFPAGLRVL VVDDDPTWLK ILEKMLKKCL YEVTICGLAR DALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LELVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKINEV RDIESHESID DFQIMRNGPE QSDDGYLVSG DPTSVKKRKD  180
TENKHDDRDH CDPSSVKKAR VVWSVDLHQK FVRAVNQIGF DKVGPKKILD LMNVPWLTRE  240
NVASHLQKYR LYLSRLQKED DLKTSCGGIK HSDLSPKDST GSFGLSNLTN MHQNDAANSG  300
YGFSGNKKLV QSIDIDPKVQ EGDLKGIISL PRTEQKKMLT GEASDPQKAR SSQMGFNDSF  360
GSIEQDVNYA AFDSSISAQY SWSGEKVPEA QFQEEHRPSV QLETSFNQLP VPGPQHHIQV  420
DCLQPTLPPI SPGSSRKERD KASPAKIKPL YASYDSHHVS NVSSAGSEID LFSVQSKCQM  480
VNPQAFEPIS NITLNMRNQG HNQSGVNDLE SFQRNLISGS GSALESLEDL QVHWLQGDCN  540
PMNLGLRNIE FSDYHDQKLI TEVPFHLYDP LKLDYEYLSD LTEYPIMDQG LFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17194256163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4488290.0AM448829.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X169822.14, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267616.10.0PREDICTED: two-component response regulator ORR26 isoform X1
TrEMBLD7TAK20.0D7TAK2_VITVI; Two-component response regulator
STRINGVIT_01s0010g02230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-131response regulator 11