PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01010221001

Common Name

VIT_01s0010g01530

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

M-type_MADS

Protein Properties

Length: 195aa MW: 21765.2 Da PI: 9.7388

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01010221001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.5	1.7e-23	17	64	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n+sn qvtfskRr+g++KKA+EL++LC+ae a+iifs+ k+y + GSVIVT01010221001 17 KIKNESNLQVTFSKRRAGLFKKASELCTLCGAETAIIIFSPGKKIYSF 64 79*******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.7E-30	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.235	8	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.12E-35	9	77	No hit	No description
SuperFamily	SSF55455	1.83E-26	9	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-19	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-25	17	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-19	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-19	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MATVRKSKGR QRIEIAKIKN ESNLQVTFSK RRAGLFKKAS ELCTLCGAET AIIIFSPGKK 60 IYSFGHPCIE SIIDRFLARN PFLNAGALQL FQAHLEAEKK RGEALDKTTK AFQRQCWWAA 120 PVEELNLEQL QMLKVSLEML RKKVERQADK LIIEASEPPA FSAPYSVGAI PPYEPQTAGF 180 DPQGSTFGFD GHFF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269\|PubMed:18334668}.
Uniprot	TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:18334668}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM428626	1e-168	AM428626.2 Vitis vinifera contig VV78X181169.22, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272514.1	1e-138	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	1e-49	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	D7TAE6	1e-141	D7TAE6_VITVI; Uncharacterized protein
STRING	VIT_01s0010g01530.t01	1e-142	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-52	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	GSVIVT01010221001

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]