PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010218001 | ||||||||
Common Name | VIT_01s0010g01500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 104aa MW: 11422.1 Da PI: 11.2502 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.3 | 3.6e-22 | 21 | 64 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +sn qvtfskRr g++KKA+ELS+LC+ae a+i+fs+ k+y + GSVIVT01010218001 21 ESNLQVTFSKRRSGLFKKASELSTLCGAETAIIVFSPGKKVYSF 64 7899**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.577 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.2E-28 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-27 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.47E-32 | 9 | 78 | No hit | No description |
PRINTS | PR00404 | 8.6E-19 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-24 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-19 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-19 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MATIRKSKGR QRVEMTKMAK ESNLQVTFSK RRSGLFKKAS ELSTLCGAET AIIVFSPGKK 60 VYSFGHPSVE SIVDRFLTRN PLTNAGTLQL FEAHRASNTT NTN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM425696 | 1e-155 | AM425696.2 Vitis vinifera contig VV78X155485.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272375.3 | 8e-65 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-41 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7TAE5 | 1e-69 | D7TAE5_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0010g01500.t01 | 2e-70 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-44 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010218001 |
Publications ? help Back to Top | |||
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