PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010126001
Common NameVIT_01s0010g00740
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 497aa    MW: 53322.8 Da    PI: 7.2526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010126001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-09311359355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  GSVIVT01010126001 311 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 359
                        58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.61E-11306363No hitNo description
SuperFamilySSF474596.15E-17306377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16309375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6311359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDMSDKDKFE LEKRSGDSLN YHSASMSSDW RFGGVCKGDL VGSSSCSSAS MVDSFGPNLW  60
DHPANSQTLG FCDMNVQNNA STSSTLGIRK GGPGSLRMDI DKTLDIGWNP PSSMLKGGIF  120
LPNAPGMLPQ GLSQFPADSG FIERAARFSC FNGGNFSDMM NPFSIPESLN PYSRGGGMLQ  180
QDVFASNGLK SVPGGQSQKD EPSMAEISKD VSSAKQNKEL GCGEPSSGKG LGSKKRKRSG  240
QDPEIDQVKG SPQQPGEASK DNPEIQHKGD QNPSSVPSKN TGKHGKQGAQ ASDPPKEEYI  300
HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR  360
QVEFLSMKLA TVNPRLDFNI EGMLGKDILQ SRVGPSSTMG FSPETTMPYP QLHPSQPGLI  420
QVGLPGLGNS SDAIRRTINS QLAAMSGGYK ESAPQLPNVW EDELHNVVQM GFSTGAPLNS  480
QDLNGSLPPG HMKAEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238KKRKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4497300.0AM449730.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X040870.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654187.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654195.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654202.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010654208.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_019076890.10.0PREDICTED: transcription factor bHLH49 isoform X1
SwissprotQ9CAA91e-128BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A438JBG60.0A0A438JBG6_VITVI; Transcription factor bHLH49
STRINGVIT_01s0010g00740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]