PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010086001
Common NameLOC100258147, VIT_01s0010g00410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 346aa    MW: 38862.9 Da    PI: 6.8732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010086001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-171360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l+++++  G g+W+++++  g+ R++k+c++rw +yl
  GSVIVT01010086001 13 RGLWSPEEDEKLIRYITTNGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                       788*******************************************97 PP
2Myb_DNA-binding45.91.3e-1466109146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+  ++d+++  G++ W+ Ia++++ gRt++++k++w++
  GSVIVT01010086001  66 RGSFSAQEERTIIDVHRIVGNK-WAQIAKYLP-GRTDNEVKNFWNS 109
                        899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.948860IPR017930Myb domain
SuperFamilySSF466892.47E-2810107IPR009057Homeodomain-like
SMARTSM007171.3E-121262IPR001005SANT/Myb domain
PfamPF002493.5E-151360IPR001005SANT/Myb domain
CDDcd001679.48E-111660No hitNo description
PROSITE profilePS5129424.37561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2464116IPR009057Homeodomain-like
SMARTSM007175.0E-1465113IPR001005SANT/Myb domain
PfamPF002491.5E-1366109IPR001005SANT/Myb domain
CDDcd001677.68E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025242anatomyinfructescence axis
PO:0007089developmental stagestem elongation stage
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIRYITT NGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS AQEERTIIDV HRIVGNKWAQ IAKYLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHHLLLP IDQINNNNNN TNACTLSHIH QQPTALVFSS NTQMIKDAKM DMKSPFLTLP  180
PLPPPPDTSN SIHPPSLHGI SAIPPFEFLN PNYVWMTTVS DQNQHAVMEL VNRSSMGRST  240
PIGPYQINPS GFEVLEENYM RDTIASLEPR KQLEGVQQQQ EEDKVCEGKA DNSKELRNGE  300
NIDNSFDSCS FDLELEYSGL LPCGTGMYCS STSSSCIDQL TWGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4478110.0AM447811.1 Vitis vinifera contig VV78X161411.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265578.10.0PREDICTED: myb-related protein 308
TrEMBLD7TA660.0D7TA66_VITVI; Uncharacterized protein
STRINGVIT_01s0010g00410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-80myb domain protein 67