PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010007001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 336aa    MW: 37636.8 Da    PI: 5.2943
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010007001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.93.8e-38481682125
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL++cA a+++g+   a+a++++l++ +s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   s ++l+a+++++ev+P+++f
  GSVIVT01010007001  48 KQLLFDCAAALAEGNIDGASAMISELRQKVSIQGDPPQRIAAYMVEGLAARMASSGKCLYKALKCKEPP---SLDRLSAMQILFEVCPCFRF 136
                        689*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQW 125
                        +  +aN aI e ++ e+rvHi+Df+i+qG+ +
  GSVIVT01010007001 137 GLTAANGAITETFKDEKRVHIVDFEINQGINF 168
                        *****************************876 PP
2GRAS208.43.9e-64166335204374
               GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                        +n+++qlh+++desvs+ ++rd++L++vksl+Pk+v++veq++ +n+++F+ rf+ea +yys++fdsl+a+lpr s++r++vEr++l+r+iv
  GSVIVT01010007001 166 INFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTIVEQDMHTNTAPFFPRFVEAYNYYSSMFDSLDATLPRGSQDRVNVERQCLARDIV 257
                        89****************************************************************************************** PP

               GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        n+vaceg+er+er e ++kWr+r+++aGF++ p+s+++ ++++ l+r+++++ y+ +ee g+l +gW+d++L+++SaWr
  GSVIVT01010007001 258 NIVACEGEERVERYEAAGKWRARMMMAGFTSCPMSQNVSDTVRKLIREYSER-YTAKEEMGALHFGWEDKSLIFASAWR 335
                        **************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.4181316IPR005202Transcription factor GRAS
PfamPF035141.3E-61166335IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEIDADWADP IGNELLHDSP KESSSSDSNL SSISSNKEVS LIPTRTTKQL LFDCAAALAE  60
GNIDGASAMI SELRQKVSIQ GDPPQRIAAY MVEGLAARMA SSGKCLYKAL KCKEPPSLDR  120
LSAMQILFEV CPCFRFGLTA ANGAITETFK DEKRVHIVDF EINQGINFAF QLHHMPDESV  180
STVNQRDQLL RMVKSLNPKL VTIVEQDMHT NTAPFFPRFV EAYNYYSSMF DSLDATLPRG  240
SQDRVNVERQ CLARDIVNIV ACEGEERVER YEAAGKWRAR MMMAGFTSCP MSQNVSDTVR  300
KLIREYSERY TAKEEMGALH FGWEDKSLIF ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-255433426378Protein SCARECROW
5b3h_A6e-255433425377Protein SCARECROW
5b3h_D6e-255433425377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.38410.0inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4866980.0AM486698.2 Vitis vinifera contig VV78X068997.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024973072.11e-143scarecrow-like protein 1
RefseqXP_024973073.11e-143scarecrow-like protein 1
RefseqXP_024973074.11e-143scarecrow-like protein 1
RefseqXP_024973075.11e-143scarecrow-like protein 1
RefseqXP_024973076.11e-143scarecrow-like protein 1
SwissprotQ9SDQ35e-92SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0D2PPV10.0A0A0D2PPV1_GOSRA; Uncharacterized protein
STRINGAl_scaffold_0001_22061e-148(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1080229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.18e-94SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]