PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01010006001 | ||||||||
Common Name | LOC100253993, VIT_18s0001g15260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 36513.5 Da PI: 9.952 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G +W++Ia++++ gR++k+c++rw++ GSVIVT01010006001 13 RGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 58 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 6e-19 | 65 | 108 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ GSVIVT01010006001 65 RKPFTEEEEERLLAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 108 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.484 | 8 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-29 | 12 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-15 | 12 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.90E-14 | 16 | 57 | No hit | No description |
Pfam | PF13921 | 1.0E-17 | 16 | 76 | No hit | No description |
PROSITE profile | PS51294 | 27.157 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-7 | 76 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEESSDDAKT CPRGHWRPAE DEKLRQLVEE YGAQNWNSIA EKLQGRSGKS CRLRWFNQLD 60 PRINRKPFTE EEEERLLAAH RIHGNKWALI SRLFPGRTDN AVKNHWHVIM ARKQREQSKL 120 CGKRSYKDVL SDSNTSSNGF RGSNSRSQQY SSANRLENSR LFEFLNPNKE GIFSISPSSS 180 SPSWTFARSI SKATNNSSST DLLRRGGRDH FNSCSSDGIM DSQNSLDRSL YRYFSNSSAY 240 GGYRTSTAFG FPNYKRVVSG PVGYSKLGDP HGMLKREFVN FGDNSPTFAK MIMTNQQEQE 300 DESIKQKNIP FIDFLGVGIS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 13 | 113 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM439704 | 0.0 | AM439704.1 Vitis vinifera contig VV78X040825.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278632.2 | 0.0 | PREDICTED: trichome differentiation protein GL1 | ||||
TrEMBL | A0A438FRY1 | 0.0 | A0A438FRY1_VITVI; Transcription factor MYB52 | ||||
TrEMBL | E0CQL8 | 0.0 | E0CQL8_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g15260.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 6e-63 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01010006001 |
Entrez Gene | 100253993 |