PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01010006001
Common NameLOC100253993, VIT_18s0001g15260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 322aa    MW: 36513.5 Da    PI: 9.952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01010006001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171358147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l ++v+++G  +W++Ia++++ gR++k+c++rw++ 
  GSVIVT01010006001 13 RGHWRPAEDEKLRQLVEEYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 58
                       899*****************************.***********996 PP

2Myb_DNA-binding59.86e-1965108146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r+++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
  GSVIVT01010006001  65 RKPFTEEEEERLLAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 108
                        789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.484859IPR017930Myb domain
SuperFamilySSF466891.72E-2912106IPR009057Homeodomain-like
SMARTSM007178.3E-151261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-271466IPR009057Homeodomain-like
CDDcd001676.90E-141657No hitNo description
PfamPF139211.0E-171676No hitNo description
PROSITE profilePS5129427.15760114IPR017930Myb domain
SMARTSM007173.2E-1664112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2167113IPR009057Homeodomain-like
CDDcd001673.34E-776107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEESSDDAKT CPRGHWRPAE DEKLRQLVEE YGAQNWNSIA EKLQGRSGKS CRLRWFNQLD  60
PRINRKPFTE EEEERLLAAH RIHGNKWALI SRLFPGRTDN AVKNHWHVIM ARKQREQSKL  120
CGKRSYKDVL SDSNTSSNGF RGSNSRSQQY SSANRLENSR LFEFLNPNKE GIFSISPSSS  180
SPSWTFARSI SKATNNSSST DLLRRGGRDH FNSCSSDGIM DSQNSLDRSL YRYFSNSSAY  240
GGYRTSTAFG FPNYKRVVSG PVGYSKLGDP HGMLKREFVN FGDNSPTFAK MIMTNQQEQE  300
DESIKQKNIP FIDFLGVGIS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131137107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4397040.0AM439704.1 Vitis vinifera contig VV78X040825.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278632.20.0PREDICTED: trichome differentiation protein GL1
TrEMBLA0A438FRY10.0A0A438FRY1_VITVI; Transcription factor MYB52
TrEMBLE0CQL80.0E0CQL8_VITVI; Uncharacterized protein
STRINGVIT_18s0001g15260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-63myb domain protein 52