PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009801001 | ||||||||
Common Name | VIT_18s0001g13320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22407.2 Da PI: 5.0285 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.5e-20 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t +eAa a++aa++kl+g GSVIVT01009801001 13 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSYEAAIAYDAAARKLYG 62 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.90E-21 | 12 | 72 | No hit | No description |
Pfam | PF00847 | 8.7E-14 | 13 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 13 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 13 | 70 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.983 | 13 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-30 | 13 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MRGKGGPENA MCTYKGVRQR TWGKWVAEIR EPNRGARLWL GTFDTSYEAA IAYDAAARKL 60 YGPEAKLNLP ELCAQPPANT QFTHNQIPPN PNITPPSLTP LPRPNIQTPP YHKYSVVPSP 120 ATQEVPPHAK PTAINEKNGE NDDGMEGVWA NMNVTLPKVD DSLWTETLMS MDFPAFDDTE 180 IFGSNLVDGN SWEMLQSPWR T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-17 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM443153 | 0.0 | AM443153.2 Vitis vinifera contig VV78X232680.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002280893.3 | 1e-150 | PREDICTED: dehydration-responsive element-binding protein 2D | ||||
TrEMBL | E0CPG1 | 1e-148 | E0CPG1_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g13320.t01 | 1e-148 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009801001 |