PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009781001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 529aa    MW: 58577.8 Da    PI: 7.0499
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009781001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093433801954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  GSVIVT01009781001 343 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 380
                        664459******************************88 PP
2BELL105.34.1e-34206277172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erq+l+ kkakLls+l+eVdkrYkqy++q q+v s F++ ag g+ak Y +lAl++iS hFrcL+dai++qi
  GSVIVT01009781001 206 ERQDLEHKKAKLLSMLDEVDKRYKQYYDQTQIVGSFFDMLAGFGAAKTYMALALQRISCHFRCLRDAISGQI 277
                        799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-51146275IPR006563POX domain
PfamPF075262.3E-41152274IPR006563POX domain
PROSITE profilePS5007112.26321384IPR001356Homeobox domain
CDDcd000861.19E-12324385No hitNo description
SMARTSM003892.2E-9324388IPR001356Homeobox domain
SuperFamilySSF466893.59E-17325390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27327389IPR009057Homeodomain-like
PfamPF059201.7E-17341380IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MQSVGLQLKN ATGAPTGNFV TGNPQIVPRT QLGILDAEQN FLPQRLSLSL STQIPSTVPL  60
ASFQYQYVNP GLSSRFGSYV SSSAERTISC EGDESSQAKE FRNDEYLPSS FPGTDQSSVK  120
TEALCNPRYS EIPKVTGADQ CLYESFGPAN TVLNSKFLKS VQQLLDEVVN VRKTLKQQEF  180
DKHHKFHGID PNGLVTNSSC KLSSTERQDL EHKKAKLLSM LDEVDKRYKQ YYDQTQIVGS  240
FFDMLAGFGA AKTYMALALQ RISCHFRCLR DAISGQIRIT CRNLGEQDTS PNGLGGGMSR  300
LGYVDQQLRQ QRALQQFGGM RHAWRPQRGL PESSVSILRT WLFEHFLHPY PKDSEKIMLA  360
RQTGLTRSQV ANWFINARVR LWKPMVEEIY KEEIGDSETK SKSSPESPPK EPRDDSWASE  420
DKGEELQETM TSTAAAGGHL GQSHNMTLMA ATYHISELSD LGVGSQVSLA LGLRHCESDV  480
PSISGGPLIR GGDIAASVGP DTAEYNCMDS GNQRHRFGKP HLIHDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-16330388563Homeobox protein Meis2
4xrm_B5e-16330388563Homeobox protein Meis2
4xrs_A5e-16330387158Homeobox protein Meis1
4xrs_B5e-16330387158Homeobox protein Meis1
5bng_A6e-16330388159Homeobox protein Meis2
5bng_B6e-16330388159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4607340.0AM460734.2 Vitis vinifera contig VV78X168812.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281021.30.0PREDICTED: BEL1-like homeodomain protein 7
SwissprotO656851e-113BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLA5BIM70.0A5BIM7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g13150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-106BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]