PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009779001
Common NameLOC100252354, VIT_18s0001g13130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 471aa    MW: 52265.4 Da    PI: 6.2009
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009779001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-103894261954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  GSVIVT01009779001 389 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 426
                        554459******************************88 PP
2BELL99.92e-32251322172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+q++q+ +akL+ lleeV+ rY+ y++q++ v+ssFe++ag+g+ak+Yt+lAl+a+ rhF +L+dai++qi
  GSVIVT01009779001 251 EKQDIQIEIAKLIGLLEEVESRYEEYYHQMEDVVSSFEVIAGVGAAKSYTALALQAMFRHFCSLRDAIISQI 322
                        6799*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-29182320IPR006563POX domain
PfamPF075264.8E-37188318IPR006563POX domain
PROSITE profilePS5007112.017367430IPR001356Homeobox domain
SMARTSM003891.1E-9370434IPR001356Homeobox domain
CDDcd000868.98E-12370431No hitNo description
Gene3DG3DSA:1.10.10.602.1E-27375436IPR009057Homeodomain-like
SuperFamilySSF466891.28E-17375437IPR009057Homeodomain-like
PfamPF059205.3E-17387426IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVSQESSPNP TSSILHQFII SDSFTSPNQF ENHHFDAYGS HLRGSNTFPQ SLGVLPSIQS  60
LGERMSRSID LVQAPAVGEE SEISHTRHFM DLLGAANESN HQAHRLSLSL GSHVLMPSVH  120
YRQRPLNSDF VSSNYLFSGE EAREACNPGV ERLCDDYSYV SSAFATPSTS LNRSCSTSYG  180
TESFVNAVGN SRYLRPTQSL LEEVVNAGGK AIDLSNEKYI GRLSRSGRRG ALGFASELKA  240
ELCGNGSLSA EKQDIQIEIA KLIGLLEEVE SRYEEYYHQM EDVVSSFEVI AGVGAAKSYT  300
ALALQAMFRH FCSLRDAIIS QINVARRKLS HDLPKISTGF SQLSLFDQEG RNNRMTLQQL  360
GMFQSHRQAW RPIRGLPETS VAILRSWLFE HFLHPYPNDS EKLMLASQTG LTKNQVSNWF  420
INARVRLWKP MIEEMYKEEF AESSVESDPL VASSSTREGG ASDNGEGWKG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17376433158Homeobox protein Meis1
4xrs_B6e-17376433158Homeobox protein Meis1
5bng_A8e-17376434159Homeobox protein Meis2
5bng_B8e-17376434159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3810420.0FQ381042.1 Vitis vinifera clone SS0ACG1YJ10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281033.10.0PREDICTED: BEL1-like homeodomain protein 11
RefseqXP_010664732.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-103BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLE0CQI90.0E0CQI9_VITVI; Uncharacterized protein
STRINGVIT_18s0001g13130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-102BEL1-like homeodomain 11