PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009761001
Common NameLOC100260944, VIT_18s0001g12970
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 428aa    MW: 46032.6 Da    PI: 8.0373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009761001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-053153531255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  GSVIVT01009761001 315 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 353
                        7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.401303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-11313365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-5313357No hitNo description
Gene3DG3DSA:4.10.280.104.0E-9317360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESANRHHQH QLQDQLVVSS PLLAANPSCY APAPSNHGWT PNIILNTGSF NPNFNGILFN  60
PRDSRQKNDS ILHPLNSSVV QDLGFHWASN AGSFTSQSAH DLHPTIKEEL SESFPKFTEM  120
INSSSSAVED LHLPPTSYIR SKDLNDLSEK LLLKSFSSGC QINGLQLSAG EFCANAQSCN  180
TGFGGVAIPS RGHFSQIFPT INISNLSQPS STISSSLDMN LQALDLLTSA RFSGTFSQPS  240
HNNLGLFKDS LSFGLDHLQQ STNRPSNSSS KISPFTNGVA EVKRPSSFLE PKATQATPKK  300
SRLESRASCP PIKVRKEKLG DRIAALQQLV APFGKTDTAS VLMEAIGYIK FLQNQVETLS  360
VPYMKSSRNK SSISMQGGSA DGEGSEEPRR DLRSRGLCLV PLSCMSYVTT DCGGGGVWPP  420
PSFGGGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.295930.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4786560.0AM478656.2 Vitis vinifera contig VV78X175900.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281118.20.0PREDICTED: transcription factor bHLH110 isoform X2
TrEMBLE0CQH40.0E0CQH4_VITVI; Uncharacterized protein
STRINGVIT_18s0001g12970.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1021979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-77bHLH family protein