PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01009723001 | ||||||||
Common Name | LOC100248845, VIT_18s0001g12610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 103aa MW: 11453.8 Da PI: 8.4733 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W+ Ia+ +g g++++++k ++ GSVIVT01009723001 15 SWTQKQNKLFEEALALYDKNtpdRWANIAKAVG-GKSAEEVKRHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.671 | 11 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-8 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-5 | 14 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.2E-8 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-7 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
MASHAFSSSC YSSSSWTQKQ NKLFEEALAL YDKNTPDRWA NIAKAVGGKS AEEVKRHYEI 60 LEQDVMHIEN GQVPLPIYRS TGSSSGGSVD EQRHLLKNLK LR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-33 | 6 | 102 | 1 | 93 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.9643 | 1e-175 | leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM489018 | 1e-155 | AM489018.2 Vitis vinifera contig VV78X242076.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282280.1 | 7e-72 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 3e-34 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | E0CQD9 | 1e-70 | E0CQD9_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g12610.t01 | 3e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-36 | RAD-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01009723001 |
Entrez Gene | 100248845 |
Publications ? help Back to Top | |||
---|---|---|---|
|