PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009716001 | ||||||||
Common Name | LOC100255743, VIT_18s0001g12530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10457.6 Da PI: 7.6769 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.7e-09 | 6 | 52 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 ++WTt +l+ +a ++ ++ +W ar +g g+t +++k ++ + GSVIVT01009716001 6 NNWTTKQNKLFENALVMYDKDtpdRWQNMARAVG-GKTVEEVKRHYEM 52 69********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.992 | 3 | 58 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-7 | 4 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-6 | 6 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.1E-13 | 7 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-6 | 7 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 7 | 60 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MGSSSNNWTT KQNKLFENAL VMYDKDTPDR WQNMARAVGG KTVEEVKRHY EMLVEDVKHI 60 ESGQVPLPNY RKAGASNKGY SFNDEEQRAS F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-32 | 4 | 78 | 7 | 81 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5652 | 1e-146 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM464432 | 1e-146 | AM464432.2 Vitis vinifera contig VV78X179323.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282461.1 | 8e-64 | PREDICTED: protein RADIALIS-like 3 isoform X2 | ||||
Swissprot | Q1A173 | 2e-33 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A438K265 | 2e-62 | A0A438K265_VITVI; Protein RADIALIS-like 6 | ||||
TrEMBL | E0CQD3 | 2e-62 | E0CQD3_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g12530.t01 | 3e-63 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 5e-36 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009716001 |
Entrez Gene | 100255743 |