PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009633001
Common NameVIT_18s0001g11800
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 350aa    MW: 38927.7 Da    PI: 8.1503
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009633001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-091441811954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps +++  L++++gL+ +qV++WF N R +
  GSVIVT01009633001 144 FEHflHPYPSDADKHLLSRQTGLSRNQVSNWFINARVR 181
                        665559******************************88 PP
2BELL83.52.6e-2722751972
               BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       Vd rY++y+eq+q+v++sF+  +g g+a+pYt+lA ka+SrhFrc+kdai  q+
  GSVIVT01009633001 22 VDSRYNHYCEQIQVVVNSFDSKMGFGAANPYTTLARKAMSRHFRCMKDAILAQL 75
                       99************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-5173IPR006563POX domain
PfamPF075263.9E-23471IPR006563POX domain
PROSITE profilePS5007112.066122185IPR001356Homeobox domain
CDDcd000863.62E-12125186No hitNo description
SMARTSM003893.6E-9125189IPR001356Homeobox domain
SuperFamilySSF466893.34E-17126192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28128191IPR009057Homeodomain-like
PfamPF059203.8E-18142181IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLDEARPTGW KLLGNPMISI IVDSRYNHYC EQIQVVVNSF DSKMGFGAAN PYTTLARKAM  60
SRHFRCMKDA ILAQLKISCE LLGEKDVMAA SGLSKGETPR LRLLDQSLRQ QRALHQMGMM  120
EPEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL SRQTGLSRNQ VSNWFINARV  180
RLWKPMVEEM YQQDAKEEEA AASSEDREAN PQNHQKNSIS AQTPRSSTPP ASQRSQINAQ  240
ENDPSLDTIN YRNCFSGTQA ITQATTTTTT TTTTISQRFP TTHEAGMHQR TVAADDTWCR  300
GSVFGGEYGT TDAASLGTPA GDVSLTLGLR HAGNLPDKGR LSLRDFGAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16131189563Homeobox protein Meis2
3k2a_B1e-16131189563Homeobox protein Meis2
4xrm_A2e-16131189563Homeobox protein Meis2
4xrm_B2e-16131189563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.38150.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4847890.0AM484789.2 Vitis vinifera contig VV78X222701.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281889.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_019072326.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-113BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLE0CPY40.0E0CPY4_VITVI; Uncharacterized protein
STRINGVIT_18s0001g11800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.24e-95BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]