PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009566001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 504aa    MW: 56067.9 Da    PI: 9.6759
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009566001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-17333378147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +g+W++eEd  l ++v+++G ++W++I+r++  gR++k+c++rw + 
  GSVIVT01009566001 333 KGSWSAEEDRVLTRLVERYGARNWSLISRYIK-GRSGKSCRLRWCNQ 378
                        799****************************9.***********985 PP
2Myb_DNA-binding50.93.6e-16387429347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  GSVIVT01009566001 387 PFSAAEDDTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 429
                        799*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047591.0E-28146218IPR006460Protein of unknown function DUF617, plant
PROSITE profilePS5129425.324328383IPR017930Myb domain
SuperFamilySSF466896.47E-30331426IPR009057Homeodomain-like
SMARTSM007172.3E-15332381IPR001005SANT/Myb domain
PfamPF002495.4E-16333378IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-23334386IPR009057Homeodomain-like
CDDcd001673.33E-14335377No hitNo description
SMARTSM007171.9E-13384432IPR001005SANT/Myb domain
PROSITE profilePS5129416.902385434IPR017930Myb domain
CDDcd001673.20E-11387430No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20387431IPR009057Homeodomain-like
PfamPF002492.1E-13387429IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MIREAHAKPG ISRLLFHLFY FSLAPFFLPP NQLGGSLPFP TSKIPRTTQP TTFPNSSFSP  60
FPHPTPSILI LCSSHQSTTF SSHFSNCKLE PSLYTVLNIS SRCHQCTLVH ATKWKIRRCF  120
PCSGRLLMRS APNPPADSFE WTIFGKIGYS IRRKQMSDEE LHVMQLLRGV SMGAGVLPCQ  180
SDKDTADGEL TYMRARFERV VGSKDSEALH MINPDGAGDV GLTGCASTHR LRFEPPPTNF  240
TRGCFQEVPA LKQKGHSPSL SACTSPLPFL SIYIPHSYPS FSSFCPNPSS LFNLSSLAME  300
ATNRCSSYTS SSDSSSSESS LSGKQPNKSE RIKGSWSAEE DRVLTRLVER YGARNWSLIS  360
RYIKGRSGKS CRLRWCNQLS PSVEHRPFSA AEDDTILAAH ARYGNRWATI ARLLPGRTDN  420
AVKNHWNSTL EAAFRHLPHT FCGINAQVSI LKEIQKIYIN FVKSCPQSDH QSSFYGASLT  480
NYQFWKSTAS ASLLKKTLLC CPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-373304301101MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-3733043055155MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-3733043055155MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4863830.0AM486383.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X003670.12, clone ENTAV 115.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-50myb domain protein 77