PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009469001
Common NameLOC100266006, VIT_18s0001g10300
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 292aa    MW: 31906.9 Da    PI: 7.9017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009469001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.6e-1476124355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++h   Er RR+++++ f+ L  llP++     +K +K++i+ +Av+YIk Lq
  GSVIVT01009469001  76 ETHIWTERERRKKMRNMFSSLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 124
                        578889*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1672145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.20E-1472127No hitNo description
PROSITE profilePS5088814.55773123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1674144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-1176124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-981129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.696213291IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSEEASHGNL WQNHSCDFLN SDSNSGGSGG EKLGEKPPDS SSNSPVENRQ GMALVGRKRG  60
RRAKASDGGG GESEHETHIW TERERRKKMR NMFSSLHALL PQLPPKADKS TIVDEAVNYI  120
KTLQNSLTKL QKQRHEMQQG ATAVDCEQSI ITSQALAPDT RETSLPAGDR SLKNYFSLPT  180
NKPNLLSAPS SSLCFQTWFS PNVVVSMCGN DAHISVCSSR KPGLLATIFY ILEKHKLDVL  240
SAHISSTQQR SIYMIHAHAS GVSDDQLPKG LTVEEIFKLA VGEMTLWLSS C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.128770.0cell culture| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4627880.0AM462788.2 Vitis vinifera contig VV78X037236.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284878.30.0PREDICTED: transcription factor bHLH95
TrEMBLE0CPT50.0E0CPT5_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-48bHLH family protein