PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009441001
Common NameVIT_18s0001g10030
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 320aa    MW: 34756.4 Da    PI: 9.2797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009441001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.35.1e-31247304359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+v+++tYeg+Hnh+
  GSVIVT01009441001 247 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTVLTVTYEGDHNHS 304
                        99************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.3E-18198243IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32233305IPR003657WRKY domain
PROSITE profilePS5081129.344240306IPR003657WRKY domain
SuperFamilySSF1182904.97E-26242305IPR003657WRKY domain
SMARTSM007741.0E-36245305IPR003657WRKY domain
PfamPF031062.8E-26247303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAVELMMGYA NDSFAAKMED NALQEAASAG IQSVEKLVKL LSQCQQQKQT TTSLEIDIDC  60
TAVADMAVTK FKRVISLLDR TRTGHARFRR APLVPPQQPP QDTDTPVPVS HHQPAEDKQT  120
SVSKIYCPTP VHPIEKKESM TTINFTTSHS VSAPNSFVSS LTGDTESVQP SLSSGFHISN  180
LSQVSSAGRP PLSSSSLKRK CSSMDDAGAK CGSSFGRCHC SKKRKLRVKR VVRVPAISTK  240
MADIPPDDFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERALDDP TVLTVTYEGD  300
HNHSQSITDA TAALVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-202383031074Probable WRKY transcription factor 4
2lex_A7e-202383031074Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.193830.0inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4487840.0AM448784.2 Vitis vinifera contig VV78X077229.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284966.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-104WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLE0CPR70.0E0CPR7_VITVI; Uncharacterized protein
STRINGVIT_18s0001g10030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-78WRKY DNA-binding protein 7