PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01009393001
Common NameLOC100253913, VIT_18s0001g09540
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 323aa    MW: 36689.6 Da    PI: 5.4903
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01009393001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  GSVIVT01009393001  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSLFS 58
                       68*******************************************98776 PP
2K-box24.51.1e-09106173572
              K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                         +   ++++ e+ qqe+ k k++++ +q+ +R + G+  e  +++e +  eq Le+ lk++R +K+ l
  GSVIVT01009393001 106 ASPMSTDSQLEEIQQEILKYKSQLDDMQKRLRIFEGDPSEITTVREVEYREQILEETLKQVRFQKQAL 173
                        444578999*****************************************************999754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.534161IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-30282IPR002100Transcription factor, MADS-box
CDDcd002653.22E-38275No hitNo description
PRINTSPR004043.0E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-253859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.58.900.00192175No hitNo description
PfamPF014862.3E-5111173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSLFSGN  60
KSIEEIMTRY VNLPEHERGR LHNQEFLQRA LGKLKSEANR TYQAAASPMS TDSQLEEIQQ  120
EILKYKSQLD DMQKRLRIFE GDPSEITTVR EVEYREQILE ETLKQVRFQK QALEEKYNTT  180
EPQPTTQVHL PPETANVNGF ISGNPNNMLD WLPPRDPQVQ ILNFLDSNGL LPMREQPQRM  240
VEILPPSSTL LPGQNIHLED HMSPSSGMEE DNNVQRPQFG PAIDVNLSPW AEFYPTAGNG  300
SYPAAQPRGP ALLELFLSQF TP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-16180179Myocyte-specific enhancer factor 2B
1tqe_Q4e-16180179Myocyte-specific enhancer factor 2B
1tqe_R4e-16180179Myocyte-specific enhancer factor 2B
1tqe_S4e-16180179Myocyte-specific enhancer factor 2B
6bz1_A5e-16180179MEF2 CHIMERA
6bz1_B5e-16180179MEF2 CHIMERA
6bz1_C5e-16180179MEF2 CHIMERA
6bz1_D5e-16180179MEF2 CHIMERA
6c9l_A4e-16180179Myocyte-specific enhancer factor 2B
6c9l_B4e-16180179Myocyte-specific enhancer factor 2B
6c9l_C4e-16180179Myocyte-specific enhancer factor 2B
6c9l_D4e-16180179Myocyte-specific enhancer factor 2B
6c9l_E4e-16180179Myocyte-specific enhancer factor 2B
6c9l_F4e-16180179Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.118220.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4753226e-97AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285097.10.0PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLE0CPM90.0E0CPM9_VITVI; Uncharacterized protein
STRINGVIT_18s0001g09540.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-52AGAMOUS-like 104