PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01009360001 | ||||||||
Common Name | LOC100255841, VIT_18s0001g09250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24105.4 Da PI: 8.2594 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.8 | 4.6e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C+++C+l+ ++ p++q ++ +v k+FG+s ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++++ GSVIVT01009360001 2 SCNGCRVLRKGCSDSCILRTCLqwienPEAQGYATLFVSKFFGRSDLMSFISAVPENKRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHV 93 6******************************************************************************************* PP DUF260 88 eqlkaelallk 98 +q++++++l++ GSVIVT01009360001 94 CQAAVDTVLAG 104 ****9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.523 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDSCILR TCLQWIENPE AQGYATLFVS KFFGRSDLMS FISAVPENKR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVDT VLAGGTLRPI PGILAGPIKP 120 GFDEASATFC TDAWKLRDAY SLSKPFMRDN ASEEAKRIET QPPHLGISAT ARFSNKINAG 180 RGKRSGTSFC SEGSSGTMSY DGSDDDRNMS GCQERKLLNL FI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.12831 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452059 | 0.0 | AM452059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X020259.15, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285250.1 | 1e-165 | PREDICTED: LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 1e-68 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A438DYF0 | 1e-164 | A0A438DYF0_VITVI; LOB domain-containing protein 38 | ||||
TrEMBL | E0CP37 | 1e-164 | E0CP37_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0001g09250.t01 | 1e-165 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-71 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01009360001 |
Entrez Gene | 100255841 |