PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01009299001

Common Name

LOC100260890, VIT_18s0001g08650

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

GRF

Protein Properties

Length: 476aa MW: 51361.3 Da PI: 9.3559

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01009299001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.5	1.3e-24	128	172	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e GSVIVT01009299001 128 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 172 79****************************************985 PP
2	QLQ	62.5	1.1e-21	58	94	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+P+P++Ll++i+k GSVIVT01009299001 58 GPFTQSQWMELEHQALIYKYITANVPIPSNLLMPIRK 94 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.3E-13	58	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.161	59	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.4E-16	59	93	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	128	172	IPR014977	WRC domain
Pfam	PF08879	5.3E-21	129	171	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MLSFSSPKSE PLFMERSSQN AIFPYYHHTS SAYNRNTGYS SGNLNGGSMH GVMAGVRGPF 60 TQSQWMELEH QALIYKYITA NVPIPSNLLM PIRKALDSVG FSTFSAGALR PNTLGWGSFH 120 LGFSNNTDPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKPV EGQTGHSVPG 180 PTTTATKLMP ITSSSSASVV PGGGTSNSLA IAHHQIKNLH PGASNPSAAT PINRIFLNKE 240 NVGERMQETQ GLSILSSTID QKSKENQFSL PKQQIPYEES SRAGFGLVPS NSLLSKSSSF 300 MNCRNFDDWP KNQSDRTAIS WPDIDLQSDR TQLSISIPMA SSDFILSREF DPIQMGLGVG 360 SVLNEPNQRQ ANWIPISWET SMGGPLGEVL HSTNNNGGDC KNSSALNLMT EGWDGSPRLG 420 SSPTGVLQKT SFGSLSNSSA GSSPRAGNKK TNDGASLCND LLGSTLVNSS SLPSL*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MLSFSSPKSE PLFMERSSQN AIFPYYHHTS SAYNRNTGYS SGNLNGGSMH GVMAGVRGPF  60
TQSQWMELEH QALIYKYITA NVPIPSNLLM PIRKALDSVG FSTFSAGALR PNTLGWGSFH  120
LGFSNNTDPE PGRCRRTDGK KWRCSRDAVA DQKYCERHMN RGRHRSRKPV EGQTGHSVPG  180
PTTTATKLMP ITSSSSASVV PGGGTSNSLA IAHHQIKNLH PGASNPSAAT PINRIFLNKE  240
NVGERMQETQ GLSILSSTID QKSKENQFSL PKQQIPYEES SRAGFGLVPS NSLLSKSSSF  300
MNCRNFDDWP KNQSDRTAIS WPDIDLQSDR TQLSISIPMA SSDFILSREF DPIQMGLGVG  360
SVLNEPNQRQ ANWIPISWET SMGGPLGEVL HSTNNNGGDC KNSSALNLMT EGWDGSPRLG  420
SSPTGVLQKT SFGSLSNSSA GSSPRAGNKK TNDGASLCND LLGSTLVNSS SLPSL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.17604	0.0	inflorescence\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM473368	0.0	AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002283504.2	0.0	PREDICTED: growth-regulating factor 1
Swissprot	Q6AWY3	1e-114	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	F6H175	0.0	F6H175_VITVI; Uncharacterized protein
STRING	VIT_18s0001g08650.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3357	12	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-91	growth-regulating factor 1

Link Out ? help Back to Top
Phytozome	GSVIVT01009299001
Entrez Gene	100260890

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]